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. 2021 Aug 13;49(16):9280–9293. doi: 10.1093/nar/gkab691

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© The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 2. — Specific contacts between Yap1 five-residues recognition motif (RxxxNxxAQxxFR) and the three YREs in two genomic environments, ATR1 and OYE2. For the Yap1–DNA complexes, Yap1 monomer 1 is in yellow, Yap1 monomer 2 is in turquoise, and DNA is in grey, where YRE is highlighted with dark-grey. The ATR1-environment is blue-marked and the OYE2-environment is orange-marked. The plots show the strength of specific contacts exploited by Yap1. For the definition of a contact strength see Supplementary Methods. (A) Yap1–YRE1. (B) Yap1–YRE2. (C) Yap1–YRE3.