TABLE 3.
Correlation between SNP genotype and geographical location
| SNP type | Countries where the M. leprae genotype has been reporteda | Reference(s) |
|---|---|---|
| 1A (branch 1) | Bangladesh (B-105), Guyana (I487), India (TN), Indonesia (Indonesia-03), Japan (Japon-35), South Korea (Coree-04), New Caledonia (N-Cal-94003), Nepal (Nepal-02), Philippines (Phi-01), Thailand (Thai53) | 18 |
| 1B (branch 1) | Antilles (S2_95034), French West Indies (89001), India (Inde-825) | 18, 38 |
| 1C | Bangladesh (B-107), New Caledonia (N-Cal-97021), Nepal (Nepal-B14230) | 18 |
| 1D (branch 1) | Bangladesh (B-112), Brazil (Br2016-18), French West Indies (88056), India (S11_Inde2), Japan (Japon-27), Madagascar (Mdg-B107), Malawi (Malawi-02), Nepal (Nepal-21A), Pakistan (Pak), Venezuela (V-17) | 18, 19, 38 |
| 2E (branch 2E) | Ethiopia (ARLP-08), Malawi (Malawi-01) | 18, 19 |
| 2F (branch 2F) | Iran (Iran-10), Denmark (Refshale_16),b Sweden (3077),b Turkey (Turc-1-6), UK (SK8)b | 18, 38 |
| 2G | New Caledonia (N-Cal-82061), Nepal (Nepal-B5008) | 18 |
| 2H (branch 2H) | Ethiopia (Afr-Eth) | 18 |
| 3I (branch 3) | Brazil (Brazil-01), Denmark (Jorgen_625),b French West Indies (85054), UK (SK2),b Morocco (Maroc-01), Mexico (NHDP98), USA (Armadillo-260,c NHDP10), Venezuela (V-01) | 18, 38 |
| 3J | New Caledonia (N-Cal-96008) | 18 |
| 3K-0 (branch 0) | China (S10_Ch-04), Indonesia (Indonesia-16), Hungary (KD271), b Japan (Zensho-4), South Korea (Korea-3-2), New Caledonia (S9_96008), Philippines (CM1)d | 19, 32, 38, 39 |
| 3K-1 (branch 5) | Japan (Zensho-9), South Korea (K02), Marshall Islands (US57), Philippines (PS04), Turkey (Turc2.3) | 19 |
| 3L (branch 4) | New Caledonia (N-Cal-92041) | 18 |
| 3M (branch 4) | France (Fr-2310), French West Indies (1261) | 18 |
| 4N (branch 4) | Benin (Bn7-39), Brazil (Brazil-05), Guinea (Gu4-17), Ivory Coast (C-I-07), French West Indies (81030), Mali (S13_Ml-3-28), Morocco (Maroc-2704), Senegal (Senegal-88063), Venezuela (V-06) | 18, 19 |
| 4O (branch 4) | Guinea (C30), Ivory Coast (C-I-02), Mali (S14_Ml-2-7), Senegal (Senegal-2662), Venezuela (V-07) | 18, 19 |
| 4P (branch 4) | Brazil (Br4923), French West Indies (98007), Mali (Mali-C13), Venezuela (V-10) | 18 |
a
Representative strain is in parentheses.
b
Ancient DNA extracted from medieval skeletons.
c
M. leprae strains found in wild armadillo.
d
M. leprae strains found in Cynomolgus macaque.