| 1 | Flower 6-merous; capsule dehiscing from the base | Microlicia macrantha |
| – | Flower 5-merous; capsule dehiscing from the apex | 2 |
| 2 | Anther polysporangiate | 3 |
| – | Anther tetrasporangiate | 4 |
| 3 | Leaf blade with glaucous, villous indumentum; hypanthium campanulate | Microlicia fasciculata |
| – | Leaf blade with greenish to yellowish, setose indumentum; hypanthium urceolate | Microlicia helvola |
| 4 | Petal white to pinkish-white or cream to white with pink vein | 5 |
| – | Petal pinkish or magenta | 6 |
| 5 | Leaf discolorous (darker adaxial surface), revolute at the margin; petiole 6–10 mm long; flower with a short pedicel (1–2 mm long) | Microlicia parviflora |
| – | Leaf concolorous (green), flat at the margin; petiole 2–3 mm long; flower with a long pedicel (6–9 mm long) | Microlicia phlogiformis |
| 6 | Main branch with leaf larger than in the lateral branches | 7 |
| – | Main and lateral branches with the same size leaf | 8 |
| 7 | Leaf blade cordate; hypanthium campanulate; sepal positioned horizontally on flower and immature fruit | Microlicia cordata |
| – | Leaf blade oblong to ovate-oblong, sometimes elliptic, rare lanceolate; hypanthium cylindrical; sepal deflexed on flower and immature fruit | Microlicia deflexa |
| 8 | Stamen with concolorous anther (yellow), sometimes with vinaceous spots; petal longer than 8.5 mm | Microlicia polystemma |
| – | Stamen with bicolorous anther (vinaceous and yellow); petal less than 8 mm | 9 |
| 9 | Leafblade with dense indumentum of setose trichomes and spherical glands; hypanthium cylindrical; petal with greenish abaxial surface at the apex | Microlicia johnwurdackiana |
| – | Leafblade with sparse indumentum of spherical glands; hypanthium campanulate; petal entirely magenta | Microlicia trembleyiformis |