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. Author manuscript; available in PMC: 2021 Oct 1.
Published in final edited form as: Cancer. 2021 Jun 23;127(19):3531–3540. doi: 10.1002/cncr.33691

Figure 4: Genomic duplications associated with HPV integration.

Figure 4:

(A) UM-SCC-47. (B-D) PDX-294R. (E) TumorA. Red arrows indicate integration sites. Each plot shows the number of overlapping barcodes observed in sequencing reads of that region. (F) Local assembly around the HPV integration sites in UM-SCC-47 using Nanopore sequencing data. The scaffold mapped to different regions was marked by different colors. Gray: match to human genome reference. Green, pink and yellow: match to HPV genome. Potential duplications were marked by the same color.