Figure 4.
Structure of Bsp-lig bound to post-ligation product DNA. (A) Overall structure with latch region highlighted in magenta. Inset shows Bsp-lig active site with ligated nucleotides in DNA substrate indicated in red. AMP in cyan and key active site residues of Bsp-lig as green sticks. (B) Structure of ChlV-lig bound to DNA with latch highlighted in lime. (C) Structure of Ame-lig bound to DNA. (D) Superposition of latch regions from Bsp-lig (magenta) and ChlV-lig (lime) with key DNA-interacting residues shown as sticks. (E) Detailed view of interactions of Bsp-lig latch (magenta, top) and ChlV-lig latch (lime, lower) with DNA. DNA nucleotides and protein side-chains involved in interactions are shown as sticks, hydrogen bonds and salt bridges are indicated with yellow dashed lines. (F) Sequence logo of latch region for 28 Bsp-lig homologs (top) and alignment between latches of Bsp-lig and ChlV-lig (lower) with fully-conserved residues highlighted in red and synonymous differences indicated in red text.