TABLE 3.
START genes in Oryza sativa var. japonica and their best orthologs amongst other nine rice species.
| Cultivated rice species |
Wild rice species |
||||||||
| Oryza sativa var. japonica | Oryza sativa var. indica | Oryza glaberrima | Oryza rufipogon | Oryza nivara | Oryza barthii | Oryza glumipatula | Oryza meridionalis | Oryza punctata | Oryza brachyantha |
| LOC_Os03g 01890_HZSM | BGIOSGA01 1687_HZSM | ORGLA03G0 005300_HZSM | ORUFI03G 00510_HZSM | ONIVA11G211 80_HZSM | OBART03G 00720_HZSM | OGLUM03G0 0670_HZSM | OMERI03G0 0480_HZSM | OPUNC03G 00630_HZSM OPUNC0 3G00670_HZSM | OB03G1 0760_HZSM |
| LOC_Os03g 43930_HZSM | BGIOSGA 013211_HZSM | ORGLA03G0 253300_HZSM | ORUFI03 G28280_HZSM | ONIVA03G 28370_HZSM | OBART03G 27200_HZSM | OGLUM03G 27880_HZSM | OMERI03G 00550_HZSM | OPUNC03G 24840_HZSM | OB03G35 020_HZSM |
| LOC_Os10g 33960_HZSM | BGIOSGA 033144_HZSM | ORGLA10G0 115700_HZSM | ORUFI10G 14170_HZSM | ONIVA10G14 800_HZSM | OBART10G 13430_HZSM | OGLUM10G 13240_HZSM | OMERI10G 10230_HZSM | OPUNC10G 11850_HZSM | OB10G2 0600_HZSM |
| LOC_Os12g4 1860_HZSM | BGIOSGA0 35845_HZSM | ORGLA12G0 158900_HZSM | ORUFI1 2G20830_HZSM | ONIVA12G 17580_HZSM | OBART12G 18630_HZSM | OGLUM12G 20280_HZSM | OMERI12G 14040_HZSM | OPUNC12G1 6840_HZSM | OB12G 25330_HZSM |
| LOC_Os01g 10320_SM | BGIOSGA 002186_HZSM | ORGLA01G 0060700_SM | ORUFI01 G06940_HZSM | ONIVA0 1G07970_HZSM | OBART01G 06400_HZSM | OGLUM01G 07380_HZSM | OMERI01G0 6500_HZSM | OPUNC01G0 6180_HZSM | OB01G1 6410_HZSM |
| LOC_Os06g 50510_SM | ORUFI06G 29670_mS | ONIVA06G 30280_mS | OBART06G 27690_mS | OGLUM06G 29150_mS | |||||
| LOC_Os02g4 5250_HZS | BGIOSGA0 05852_HZS | ORGLA02G 0238300_HZS | ORUFI02G 29080_HZS | ONIVA0 2G30520_HZS | OBART02G 27630_HZS | OGLUM0 2G28170_HZS | OMERI02G2 6880_HZS | OPUNC02G 25360_HZS | OB02G3 5000_HZS |
| LOC_Os08g1 9590_HZS | BGIOSGA02 8396_HZS | ORGLA08G 0080600_HZS | ORUFI08G 10670_HZS | ONIVA10G 10170_HZS | OBART08G 09450_HZS | OGLUM08G 10180_HZS | OMERI08G 08060_HZS | OPUNC08G 08700_HZS | OB08G 18460_HZS |
| LOC_Os01g 55549_HS | BGIOSGA 000782_HS | ORGLA01G0 257700_HS | ORUFI0 1G34950_HS | ONIVA01G 36080_HS | OBART0 1G31750_HS | OGLUM01G 35890_HS | OMERI01G 28810_HS | OPUNC01G 30780_HS | OB01G 40650_HS |
| LOC_Os01g 57890_HS | BGIOSGA 004594_mS BGIOSGA 004593_HS | ORGLA01G 0275300_HS | ORUFI01G 36780_HS | ONIVA01G 38360_HS | OBART01G 33600_HS | OGLUM01G 37810_HS | OMERI01G 30450_HS | OPUNC01 G32670_HS | OB01G42420_HS |
| LOC_Os04g 48070_HS | BGIOSG A014527_HS | ORGLA04G0 191300_HS | ORUFI04G 23720_HS | ONIVA04G 20660_HS | OBART04G 22070_HS | OGLUM04G 22100_HS | OMERI04G 18610_HS | OPUNC04G 19830_HS | OB04G29090_HS |
| LOC_Os04g 53540_HS | BGIOSGA 014304_HS | ORGLA04G0 231200_HS | ORUFI04G 27800_HS | ONIVA04G 25060_HS | OBART04G 26630_HS | OGLUM04G 26010_HS | OMERI04G 21680_mS | OPUNC04G 23630_HS | OB04G 32930_HS OB08G1 2470_HS |
| LOC_Os06g1 0600_HS | BGIOSGA0 21700_HS | ORGLA06G 0063600_HS ORGLA06G0 247800_HS | ORUFI06G 07070_HS | ONIVA06G 08130_HS | OBART06G 06830_HS | OGLUM06G 07200_HS | OMERI06G 08000_HS | OPUNC06 G06470_HS | OB06G 16250_HS |
| LOC_Os08g 04190_HS | BGIOSGA 027698_HS | ORGLA08G 0016400_HS | ORUFI08G 02510_HS | ONIVA08G0 2450_HS | OGLUM08G 02240_HS | OMERI08G 02310_HS | OPUNC0 8G02090_HS | ||
| LOC_Os08g 08820_HS | BGIOSGA 028102_HS | ORGLA08G0 042800_HS | ORUFI08G 05670_HS | ONIVA08G 05020_HS | OBART08G 05070_HS | OGLUM08G 05340_HS | OPUNC08G 04870_HS | OB08G 15100_mS | |
| LOC_Os09g 35760_HS | BGIOSGA 029405_HS | ORUFI09G 18410_HS | ONIVA09G 18120_HS | OBART09G 17090_HS | OGLUM09G 17630_HS | OMERI09G 12650_HS | OPUNC09G 15430_HS | OB09G 23660_HS | |
| LOC_Os10g 42490_HS | BGIOSGA 031343_HS | ORGLA10G 0146400_HS | ORUFI10 G20730_HS | ONIVA10G 22060_HS | OBART10G 19440_HS | OGLUM10G 19540_HS | OMERI10G 15290_HS | OPUNC10G 17890_HS OPUNC10G 17920_HS | OB10G 26620_HS |
| LOC_Os02g 01270_PSD | BGIOSGA0 07330_PSD BGIOSGA 022187_PSD | ORGLA02G 0002000_SD | ORUFI02G 00290_PSD | ONIVA02G 00280_PSD ONIVA06G 01480_PSD | OBART02G 00270_PSD | OGLUM02G 00270_PSD OGLUM06G0 1090_PSD | OMERI02G0 9330_PSD OMERI06G 01090_PSD | OPUNC11G 05520_PSD | OB02G1 0290_PSD OB06G 11230_PS OB10G2 0570_PSD |
| LOC_Os10g 31770_PSD | BGIOSGA 033068_PSD | ORGLA10G 0106900_PSD | ORUFI10G 12680_PSD | ONIVA1 0G11380_PSD ONIVA10G 14690_PSD | OBART10G 12110_PSD | OGLUM10G 11870_PSD | OMERI10G 09100_PSD | OPUNC10G 10390_PSD | OB10G 19410_PSD |
| LOC_Os08g 34060_SD | BGIOSGA 028734_SD | ORGLA08G 0139700_SD | OB08G2 3520_SD | ||||||
| LOC_Os02g 03230_mS | BGIOSGA 007209_mS | ORGLA02G 0018400_mS | ORUFI02G 01930_mS | ONIVA02G 01830_mS | OBART02G 01950_mS | OGLUM02G 01810_mS | OMERI02G 02610_mS | ||
| LOC_Os02g 26860_mS | BGIOSGA 008180_mS | ORGLA02G0 141000_mS | ORUFI02G1 6760_mS | ONIVA02G1 7540_mS | OBART02G 16280_mS | OGLUM02G 16340_mS | OMERI02G 15840_mS | OPUNC02G 14500_mS | OB02G24430_mS |
| LOC_Os04g 02910_mS | BGIOSGA 015687_mS | ORGLA04G 0008500_mS | ORUFI04G 01090_mS | ONIVA04G 00760_mS | OBART04G 01070_mS | OGLUM04G 00980_mS | OMERI04G 00950_mS | OPUNC04G 01070_mS | OB04G 10780_mS |
| LOC_Os06g 50560_mS | |||||||||
| LOC_Os06g 50724_mS | BGIOSGA 023612_mS | ||||||||
| LOC_Os07g0 8760_mS | BGIOSGA0 24704_mS | ORGLA07G0 045900_mS | ORUFI07G 05330_mS | ONIVA07G 04320_mS | OBART07G 05510_mS | OGLUM07G 04970_mS | OMERI05G 17970_mS | OPUNC07G 05340_mS | OB07G14050_mS |
| LOC_Os07g 47130_mS | ORUFI07G 26520_mS | OGLUM07G 25570_mS | |||||||
| LOC_Os11g 14070_mS | BGIOSGA 034213_mS | ORGLA11G0 072100_mS | ORUFI11G 08470_mS | ONIVA11G 08330_mS | OBART11G 08150_mS | OPUNC11G 07930_mS | OB11G 16480_mS | ||