TABLE 1.
Prediction of protein coding potential for Nqo1-AS1 (Fantom3_F830212L20).
| ID | Peptide length | Fickett score | Isoelectric point (pI) | ORF integrity | Coding probability | label |
|---|---|---|---|---|---|---|
| Nqo1-AS1 | 87 | 0.32762 | 5.12103271484 | 1 | 0.171312 | noncoding |
| Hotair | 48 | 0.34113 | 11.539855957 | −1 | 0.184882 | noncoding |
| Nqo1 (NM_008,706.5) | 275 | 0.43184 | 8.74053955078 | 1 | 0.999935 | coding |
The RNA sequence of Nqo1-AS1, HOTAIR or Nqo1 was put into the Coding Potential Calculator (CPC) algorithm version 2. CPC2 was available freely at http://cpc2.cbi.pku.edu.cn. Hotair was used as a negative control. Nqo1 was used as a positive control.