Table 1.
IC50 values of EPI-X4 determined in a 12G5-competition assay for CXCR4 mutants.
CXCR4 mutation | IC50 ± SEM (µM) | Fold change | Hill slopea | Interaction with EPI-X4b | Agreementc |
---|---|---|---|---|---|
wt | 6.99 ± 2.63 | −1.67 ± 0.50 | - | ||
L41A | 131.83 ± 61.64 | 19 | −1.02 ± 0.16 | V2 sidechain, hydrophobic | yes |
D97E | 129.08 ± 49.34 | 18 | −0.96 ± 0.11 | L1 N-terminal, salt bridge | yes |
D97S | 784.78 ± 214.89 | 112 | Nd | L1 N-terminal, salt bridge | yes |
D97T | >1000 | - | Nd | L1 N-terminal, salt bridge | yes |
D97N | >1000 | - | Nd | L1 N-terminal, salt bridge | yes |
D97Q | >1000 | - | Nd | L1 N-terminal, salt bridge | yes |
V112A | 10.96 ± 1.98 | 1.6 | Nd | L1 sidechain, hydrophobic | yes |
V112L | 41.12 ± 17.33 | 6 | −1.03 ± 0.14 | L1 sidechain, hydrophobic | yes |
D187E | 8.52 ± 2.84 | 1.2 | −1.25 ± 0.13 | T5 sidechain, H bonds | yes |
D262A | 5.21 ± 1.67 | 0.7 | −1.05 ± 0.04 | K7 sidechain, salt bridge | no |
E277A | 8.91 ± 1.43 | 1.3 | −1.21 ± 0.28 | T5 sidechain, H bonds | yes |
D97E + V112A | 18.01 ± 2.95 | 2.6 | −1.20 ± 0.15 | - | yes |
D97E + V112L | 222.74 ± 133.83 | 32 | −1.07 ± 0.15 | - | yes |
V112A + L41A | 78.04 ± 13.91 | 11 | −1.28 ± 0.26 | yes | |
D97E + V112A + L41A | 48.44 ± 24.73 | 7 | −0.93 ± 0.16 | yes |
aHill slopes were determined in GraphPad Prism using nonlinear regression curve fit. P > 0.05 for all hill slopes compared to wt (one-way ANOVA with Dunnett’s post hoc test).
bEPI-X4 residues interacting with wild-type residues of CXCR4 in the NTER-IN model.
cAgreement between the NTER-IN model and the mutagenesis experiments.