Table 4.
RT-qPCR-based validation of brain region-specific transcripts.
| Amygdala | ||||
|---|---|---|---|---|
| Affy.ID | logFC | P-Value | Gene symbol | Gene name |
| TC18000211.hg.1 | − 0.285 | 0.000 | GRP | Gastrin-releasing peptide |
| TC17001588.hg.1 | − 0.481 | 0.000 | GFAP | Glial fibrillary acidic protein |
| TC14001019.hg.1 | 0.322 | 0.001 | ARHGAP5-AS1 | ARHGAP5 antisense RNA 1 (non-protein coding) |
| Hippocampus | ||||
| TC62000125.hg.1 | 0.408 | 0.001 | IFITM4P | Interferon induced transmembrane protein 4 pseudogene |
| TC02001689.hg.1 | 0.246 | 0.000 | FNDC4 | Fibronectin type III domain containing 4 |
| TC17000602.hg.1 | − 0.306 | 0.021 | RNU6ATAC3P | RNA, U6atac small nuclear 3, pseudogene |
| TC06004109.hg.1 | 0.262 | 0.000 | TXNDC5 | Thioredoxin domain containing 5 (endoplasmic reticulum) |
| TC05000896.hg.1 | 0.262 | 0.000 | PTTG1 | Pituitary tumor-transforming 1 |
| TC06000120.hg.1 | 0.239 | 0.001 | RNF144B | Ring finger protein 144B |
| TC19002684.hg.1 | − 0.218 | 0.000 | ZNF709 | Zinc finger protein 709 |
| TC01003789.hg.1 | − 0.254 | 0.000 | ST13P19 | Suppression of tumorigenicity 13 (colon carcinoma) |
| TC15002771.hg.1 | − 0.257 | 0.001 | LOC283683 | Uncharacterized LOC283683 |
| TC12001786.hg.1 | − 0.353 | 0.000 | RASSF9 | Ras association (RalGDS/AF-6) domain family |
| TC21000138.hg.1 | 0.782 | 0.001 | CLIC6 | Chloride intracellular channel 6 |
| TC17000048.hg.1 | 0.342 | 0.000 | MED11 | Mediator complex subunit 11 |
| TC06000241.hg.1 | − 0.315 | 0.000 | ZNF391 | Zinc finger protein 391 |
| TC19001111.hg.1 | 0.190 | 0.001 | INSR | Insulin receptor |
| Prefrontal cortex | ||||
| TC18000585.hg.1 | 0.304 | 0.001 | MBP | Myelin basic protein |
| TC11000172.hg.1 | 0.501 | 0.001 | SNORA23 | Small nucleolar RNA, H/ACA box 23 |
| TC16000528.hg.1 | 0.312 | 0.001 | CBFB | Core-binding factor, beta subunit |
| TC05000825.hg.1 | − 0.263 | 0.000 | SLC26A2 | Solute carrier family 26 (sulfate transporter), member 2 |
| Thalamus | ||||
| TC08001182.hg.1 | 0.924 | 2.2756E−08 | CHRNA6 | Cholinergic receptor, nicotinic, alpha 6 (neuronal) |
| TC06000985.hg.1 | 0.351 | 2.1088E−07 | ENPP1 | Ectonucleotide pyrophosphatase/phosphodiesterase 1 |
| TC09001490.hg.1 | 0.469 | 1.4837E−06 | SUSD1 | Sushi domain containing 1 |
| TC10001287.hg.1 | 0.299 | 1.9713E−05 | ASAH2 | N-acylsphingosine amidohydrolase (ceramidase 2) |
| TC10000781.hg.1 | 0.272 | 2.217E−05 | GSTO1 | Glutathione S-transferase omega 1 |
| TC01001554.hg.1 | 0.254 | 2.5522E−05 | TDRD5 | Tudor domain containing 5 |
| TC01002654.hg.1 | 1.090 | 3.399E−05 | RAB3B | RAB3B, member RAS oncogene family |
| TC08000169.hg.1 | 0.228 | 3.7892E−05 | PIWIL2 | piwi-like 2 (Drosophila) |
| TC16000589.hg.1 | 1.121 | 8.6087E−05 | CALB2 | Calbindin 2 |
| TC02001831.hg.1 | 0.311 | 0.000 | FSHR | Follicle stimulating hormone receptor |
| TC10001246.hg.1 | 0.358 | 0.000 | ASAH2C | N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2C |
| TC13000180.hg.1 | − 0.494 | 0.000 | RN7SKP5 | RNA, 7SK small nuclear pseudogene 5 |
| TC16000643.hg.1 | 0.347 | 0.000 | PLCG2 | Phospholipase C, gamma 2 (phosphatidylinositol-specific) |
| TC01000789.hg.1 | − 0.661 | 0.000 | NEXN | Nexilin (F actin binding protein) |
| TC03001679.hg.1 | − 0.245 | 0.000 | IGSF11 | Immunoglobulin superfamily, member 11 |
| TC03001519.hg.1 | 0.231 | 0.000 | SYNPR-AS1 | SYNPR antisense RNA 1 (non-protein coding) |
| TC18000007.hg.1 | 0.403 | 0.000 | ADCYAP1 | Adenylate cyclase activating polypeptide 1 (pituitary) |
| TC0X001491.hg.1 | 0.323 | 0.000 | GABRE / MIR452 / MIR224 | GABA) A receptor, epsilon / microRNA 452 / microRNA 224 |
| TC15001362.hg.1 | 0.264 | 0.001 | CYP19A1 | Cytochrome P450, family 19, subfamily A, polypeptide 1 |
| TC05000689.hg.1 | − 0.312 | 0.001 | MYOT | Myotilin |
| TC21000120.hg.1 | − 0.296 | 0.001 | GCFC1-AS1 | GCFC1 antisense RNA 1 (non-protein coding) |
| TC09000560.hg.1 | 0.297 | 0.001 | UGCG | UDP-glucose ceramide glucosyltransferase |
| TC09000480.hg.1 | 0.180 | 0.001 | HABP4 | Hyaluronan binding protein 4 |
| TC02000511.hg.1 | − 0.333 | 0.001 | MAT2A | Methionine adenosyltransferase II, alpha |