Table 1.
Summary Statistics of the Reed Warbler Genome Assembly and Annotation
| Genome Assembly | |||
|---|---|---|---|
| Estimated genome size | 1.13 Gb | ||
| Guanine and cytosine content | 41.91% | ||
| N50 length (contig) | 13 Mb | ||
| Longest contig | 48 Mb | ||
| Total length of contigs | 1.07 Gb | ||
| N50 length (scaffold) | 74.44 Mb | ||
| Longest scaffold | 153.80 Mb | ||
| Total length of scaffolds | 1.08 Gb | ||
| Complete BUSCOs | 95.7% | ||
|
| |||
| Transposable Elements | Percent (%) | Total length | |
|
| |||
| DNA | 0.22 | 2.35 Mb | |
| LINE | 4.11 | 44.2 Mb | |
| SINE | 0.09 | 0.98 Mb | |
| LTR | 4.50 | 48.4 Mb | |
| Unknown | 0.55 | 5.9 Mb | |
| Other (satellites, simple repeats, low complexity) | 1.49 | 16 Mb | |
| Total | 10.94 | 117.6 Mb | |
|
| |||
| Protein-Coding Genes | |||
|
| |||
| Predicted genes | 14,645 | ||
| Average coding sequence length (bp) | 1,782 | ||
| Average exon length (bp) | 284 | ||
| Average intron length (bp) | 2918 | ||
| Complete BUSCOs | 97.5% | ||