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. Author manuscript; available in PMC: 2021 Sep 23.
Published in final edited form as: J Chem Inf Model. 2020 Mar 10;60(3):1253–1275. doi: 10.1021/acs.jcim.9b01080

Table 6.

Observation of Standard and Nonstandard InChI Pass and Fail for Each Rule (PubChem)a

NonStdInChI StdInChI
Rule number Partial InChI match Complete InChI match InChI fail InChI success rateb (%) InChI success rateb (%)
PT_02_00 184,177 488,776 523,910 56.22 7.96
PT_03_00 51,385 767,997 11,986,691 6.40 0.00
PT_04_00 1029 209,430 1,647,601 11.33 0.00
PT_05_00 1078 7,636,482 12,601 99.82 99.65
PT_06_00 19,888,198 29,908,744 12,979,805 79.32 68.50
PT_07_00 69,248 7,214,629 473,749 93.88 37.56
PT_08_00 14,684 952,904 88,997 91.55 90.14
PT_09_00 3,658,356 4,095,444 24,507,221 24.03 11.00
PT_10_00 16,184 1,270,264 435,923 74.68 22.55
PT_11_00 3559 204,614 328,702 38.76 33.07
PT_11_01 661 62,012 107,340 36.85 4.26
PT_11_02 766 12,005 69,209 15.57 13.96
PT_11_03 877 6664 43,900 14.65 11.90
PT_11_04 768 6719 9699 43.54 43.12
PT_12_00 44,432 2,217,528 1,325,881 63.04 0.00
PT_13_00 0 0 5701 0.00 0.00
PT_14_00 0 0 88,485 0.00 0.00
PT_15_00 0 0 88,503 0.00 0.00
PT_16_00 76 22,247 367,745 5.72 0.00
PT_17_00 1 321 1837 14.91 0.14
PT_18_00 0 23 1849 1.23 1.12
PT_19_00 0 5 1615 0.31 0.37
PT_20_00 0 0 586 0.00 0.00
PT_21_00 0 0 26,502 0.00 0.00
PT_22_00 1189 224 2,992,839 0.05 0.04
PT_23_00 347 23,263 1,225,994 1.89 0.00
PT_24_00 0 0 15,746 0.00 0.00
PT_25_00 0 0 2214 0.00 0.00
PT_26_00 0 0 4101 0.00 0.00
PT_27_00 0 0 14,785 0.00 0.00
PT_27_01 0 0 31 0.00 0.00
PT_28_00 0 0 305,195 0.00 0.00
PT_29_00 0 0 195,131 0.00 0.00
PT_29_01 19 108 24,802 0.51 0.00
PT_30_00 0 0 9586 0.00 0.00
PT_31_00 0 0 165 0.00 0.00
PT_32_00 0 0 61,800 0.00 0.00
PT_33_00 0 0 105,513 0.00 0.00
PT_34_00 0 1 717 0.14 0.00
PT_35_00 0 0 2,882 0.00 0.00
PT_36_00 0 0 361,348 0.00 0.00
PT_37_00 0 0 117 0.00 0.00
PT_38_00 0 0 5 0.00 0.00
PT_39_00 0 15 7524 0.20 0.01
PT_40_00c 0 0 0 0 0.00
PT_41_00 0 0 20,966 0.00 0.00
PT_42_00 105 6,120 431,113 1.42 0.00
PT_43_00 0 0 3078 0.00 0.00
PT_44_00 0 165 9434 1.72 0.00
PT_45_00 0 0 28,726 0.00 0.00
PT_46_00 0 0 150 0.00 0.00
PT_47_00 0 0 12,360 0.00 0.00
PT_48_00 1 29 443 6.34 0.00
PT_49_00 0 0 447 0.00 0.00
RC_03_00 0 0 8,300,320 0.00 0.00
RC_03_03 0 0 632 0.00 0.00
RC_03_04 0 0 40,862 0.00 0.00
RC_04_01 0 0 4,028,848 0.00 0.00
RC_04_02 0 0 3,666,752 0.00 0.00
RC_04_04 0 0 752 0.00 0.00
RC_09_00 0 0 274,785 0.00 0.00
RC_10_00 0 0 203,731 0.00 0.00
RC_12_00 0 0 31 0.00 0.00
RC_13_00 0 0 55,989 0.00 0.00
RC_14_00 0 2 106 1.85 1.85
RC_15_00 0 0 529 0.00 0.00
RC_16_00 0 0 3 0.00 0.00
RC_17_00 0 0 10 0.00 0.00
RC_18_00 0 0 83 0.00 0.00
RC_19_00 0 0 5982 0.00 0.00
RC_20_00 0 0 995 0.00 0.00
RC_21_00 0 0 5950 0.00 0.00
RC_22_00 0 0 960 0.00 0.00
RC_23_00 0 0 482 0.00 0.00
RC_24_00 0 0 335 0.00 0.00
VT_01_00 0 0 869 0.00 0.00
VT_01_01 0 0 1474 0.00 0.00
VT_02_00 0 0 463,075 0.00 0.00
VT_03_00 0 0 631 0.00 0.00
VT_04_00 0 0 3 0.00 0.00
VT_05_00 0 0 742 0.00 0.00
VT_06_00 0 0 31,722 0.00 0.00
VT_07_00 0 0 1769 0.00 0.00
VT_08_00 0 0 40 0.00 0.00
VT_09_00 0 0 1 0.00 0.00
VT_10_00 0 0 2 0.00 0.00
Overall d 50.31 37.39
a

Partial and Complete InChI match columns are shown only for NonStdInchi. InChI success rate = (“Complete match” + “Partial match”)/(Occurrence of rule).

b

The rules with InChI success rate of 0.00 (= 0/Occurrence of rule) indicate that the cases of InChI pass for them is 0.

c

No cases were found for rule PT_40_00, i.e., the InChI success rate of 0.00 is thus assigned to what would be strictly speaking the value 0/0.

d

Overall percentage calculated by summing up the numbers for all rules, not as average of the rate percentages.