Antibodies |
Anti-typhoid toxin MAbs and Fabs |
This manuscript |
See Method Details
|
Chemicals, peptides, and recombinant proteins |
Typhoid Toxin, Toxoid, & PltB subunits |
This manuscript |
See Method Details
|
Bacterial and virus strains |
S. Typhi ISP2825 |
Galán and Curtiss, 1991
|
NCBI Genbank accession number CP080960
|
S. Typhi ISP2825 carrying cdtBH160Q
|
Spanò et al., 2008
|
N/A |
E. coli Acella strain (E. coli BL21(DE3) ΔendA ΔrecA) |
Originally obtained from EdgeBio. Note that the Acella strain is no longer available from the vendor. |
Competent cells were prepared in our laboratory. |
Critical commercial assays |
Alexa Fluor 555 Protein Labeling Kit |
ThermoFisher |
A20174 |
RNeasy mini kit |
QIAGEN |
74104 |
iScript cDNA synthesis kit |
Bio-Rad Laboratories |
1708891 |
Herculase II Fusion DNA polymerase |
Agilent |
600677 |
Phusion DNA polymerase |
New England BioLabs |
M0530 |
QIAEX DNA Extraction Kit |
QIAGEN |
20021 |
Deposited data |
Typhoid toxin bound to TyTx1 Fab or TyTx4 Fabs |
RCSB Protein Data Bank |
PDB: 7K7H and PDB: 7K7I (see Table S1) |
Complete genome sequence of S. Typhi ISP2825 |
GenBank |
CP080960 |
Experimental models: Cell lines |
Henle-407 Cells |
Originally obtained from ATCC |
Validated using intestinal epithelial markers |
Jurkat Cells |
Originally obtained from ATCC |
TIB-152 |
Sp2/0-Ag14 |
Originally obtained from ATCC |
CRL-1581 |
Experimental models: Organisms/strains |
BALB/c |
Taconic Biosciences |
N/A |
Oligonucleotides |
See Table S3 for oligonucleotide information |
IDT |
See Table S3
|
Software and Algorithms |
GraphPad Prism 6 or 8.3 |
GraphPad Software |
https://www.graphpad.com/scientific-software/prism/
|
LI-COR Image Studio |
LI_COR Image Studio Software |
https://www.licor.com/bio/image-studio/resources
|
Excel |
Microsoft |
Office 365 |
FlowJo V10 |
TreeStar |
https://www.flowjo.com/
|
ImageJ |
National Institutes of Health |
https://imagej.nih.gov/ij/
|
Unicorn 6.3 |
GE Healthcare Life Sciences |
https://www.cytivalifesciences.com/en/us/shop/unicorn-6-3-p-01118
|
BLASTp |
National Institutes of Health |
https://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE=Proteins
|
Biacore T200 Evaluation Software |
GE Healthcare |
https://www.cytivalifesciences.com/en/us/shop/protein-analysis/spr-label-free-analysis/systems/biacore-t200-p-05644
|
CryoSparc 2 |
Punjani et al., 2017
|
https://cryosparc.com
|
Relion 3 |
Zivanov et al., 2018
|
https://www3.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page
|
PyMol |
Schrodinger |
https://pymol.org/2/
|
Chimera |
UCSF Chimera |
https://www.cgl.ucsf.edu/chimera/
|
PHENIX |
Adams et al., 2010
|
https://phenix-online.org/
|
Coot |
Emsley et al., 2010
|
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
|