Table 1. Spectral Properties of HDyesa.
intra- | extra- | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
name | X | R1 | R2 | λabs [nm] | λem [nm] | ε [104 (M cm)−1] | ΦF | D0.5 | turn-on | cellular application | |
o-TzR (26) | O | H | H | 557 | 583 | 5.52 | 0.003 | - | 95 | - | - |
(557) | (582) | (7.41) | (0.447) | ||||||||
o-TzSiR | SiMe2 | H | H | 652 | 671 | 2.16 | 0.007 | - | 45 | - | - |
HD555 (27) | O | H | CO2H | 555 | 581 | 5.10 | 0.004 | 17 | 113/123b | + | + |
(556) | (583) | (10.0) | (0.571) | (19) | |||||||
HD5Slx | O | CO2H | H | 561 | 588 | 7.70 | 0.007 | - | 45 | - | + |
HD653 (28) | SiMe2 | H | CO2H | 653d | 676d | 4.86d | 0.022d | 60 | 50b | + | + |
(652d) | (674d) | (5.92d) | (0.477d) | (63) | |||||||
HD654x | SiMe2 | CO2H | H | 654 | 673 | 12.5 | 0.007 | - | 33 | - | + |
sb-HD656 (29) | SiMe2 | H | CH2OH | 656c | 676c | 11.4c | 0.026c | - | 9.0c | + | + |
(656c) | (677c) | (10.4c) | (0.310c) |
All measurements were performed in phosphate-buffered saline (PBS pH 7.4) and turn-on experiments with 15 eq BCN unless noted otherwise. Properties of respective BCN cycloadducts of the dyes listed in parentheses (see Figure S9 for all structures and Figure S10 for spectra). The assignment of the substituents refers to the general structure in Figure 1a.
10 eq of EGFP–HaloTag–BCN.
Sodium phosphate buffer pH 3.5.
50 mM SDS in PBS pH 7.4.