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. Author manuscript; available in PMC: 2022 Sep 16.
Published in final edited form as: Mol Cell. 2021 Sep 16;81(18):3803–3819.e7. doi: 10.1016/j.molcel.2021.08.025

Key resources table

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
IMPA1 (clone H-7) Santa Cruz Biotechnology Cat#sc-374234; RRID: AB_10988246
Mff (clone B-2) Santa Cruz Biotechnology Cat# sc-398617; RRID: AB_2744543
phospho-Mff Ser146 (polyclone) Cell Signaling Tech Cat#49281; RRID: AB_2799354
IMPA2 (polyclone) GeneTex Cat#GTX103636; RRID: AB_1950587
AMPKα (polyclone) Cell Signaling Tech Cat#2532; RRID: AB_330331
AMPKβ (polyclone) Cell Signaling Tech Cat#12063; RRID: AB_ 2797812
AMPKγ (polyclone) Cell Signaling Tech Cat#4187; RRID: AB_10695248
phospho-AMPKα T172 (clone D4D6D) Cell Signaling Tech Cat#50081; RRID: AB_2799368
PKA (clone A-2) Santa Cruz, sc-28315 Cat#sc-28315; RRID: AB_628136
phospho-Drp1 S616 (polyclone) Cell Signaling Tech Cat#3455; RRID: AB_2085352
phospho-Drp1 S635 (clone D3A4) Cell Signaling Tech Cat#6319; RRID: AB_10971640
Fis (clone B-5) Santa Cruz Biotechnology Cat#sc-376447; RRID: AB_11149382
Mfn1 (clone D-10) Santa Cruz Biotechnology Cat#sc-166644; RRID: AB_2142616
Mfn2 (clone F-5) Santa Cruz Biotechnology Cat#sc-515647; RRID: AB_2811176
ULK (clone D8H5) Cell Signaling Tech Cat#8054; RRID: AB_11178668
Raptor (clone 24C12) Cell Signaling Tech Cat#2280; RRID: AB_561245
phospho-ULK S555 (clone D1H4) Cell Signaling Tech Cat#5869; RRID: AB_10707365
phospho-Raptor S792 (polyclone) Cell Signaling Tech Cat#2083, RRID: AB_2249475
Actin (clone AC-15) Sigma-Aldrich Cat#A5441, RRID: AB_476744
GAPDH (clone GAPDH-71.1) Sigma-Aldrich Cat#G8795, RRID: AB_1078991
Tubulin (clone AA13) Sigma-Aldrich Cat#T8203, RRID: AB_1841230
CDIPT (clone C-2) Santa Cruz Biotechnology Cat#sc-514255
GST (clone B-14) Santa Cruz Biotechnology Cat#sc-138, RRID: AB_627677
LC3 α/β (polyclone) Novus Cat#NB100-2220, RRID: AB_10003146
Calcineurin (D-1) Santa Cruz Biotechnology Cat#sc-373803, RRID: AB_10917925
MiD51 (clone A-6) Santa Cruz Biotechnology Cat#sc-514135
CREB (clone 24H2B) Santa Cruz Biotechnology Cat#sc-271, RRID: AB_627300
phospho-CREB S133 (clone 10E9) Santa Cruz Biotechnology Cat#sc-81486, RRID: AB_1125727
choactase (clone E-7) Santa Cruz Biotechnology Cat#sc-55557, RRID: AB_2291743
TOM20 (monoclone) Abcam Cat#ab56783, RRID: AB_945896
HRP-coupled antibodies to mouse Santa Cruz Biotechnology Cat#sc-2055, RRID: AB_631738
HRP-coupled antibodies to rabbit Thermo Fisher Cat#31480, RRID: AB_228457
Alexa Fluor 488 anti-mouse IgG Thermo Fisher Cat#A-21202, RRID: AB_141607
Rabbit normal IgG Santa Cruz Biotechnology Cat#sc-2027; RRID: AB_737197
Mouse Anti-rabbit IgG Cell Signaling Tech Cat#45262; RRID: AB_2799281
Chemicals and recombinant proteins
lithium chloride Millipore Cat#5910
AICAR Sigma-Aldrich Cat#A9978
A769662 Reagents Direct Cat#A769662
Compound C Sigma-Aldrich Cat#P5499
Myo-inositol Sigma-Aldrich Cat#I7508
AMP Sigma-Aldrich Cat#A1752
ATP Sigma-Aldrich Cat#A2383
BIO Selleckchem.com Cat#S7198
L-α-Phosphatidylinositol Sigma-Aldrich Cat#P6636
myo-Inositol 1,4,5-trisphosphate hexapotassium salt Tocris Cat#1482
phosphatidylinositol 3,4,5-triphosphate Echelon® Cat#P-3924
AMPKα1, β1, γ1 protein Millipore Cat#14-840
AMPKα1, β1, γ1 protein Promega Cat#V1921
AMPKα1, β2, γ1 protein Thermo Fisher Cat#PV6244
AMPKα2, β1, γ1 protein BPS Bioscience Cat#40024
AMPKα2, β2, γ1 protein Thermo Fisher Cat#PV6247
AMPKα1 Novus Biologicals Cat#NBP2-51992
AMPKβ1 Novus Biologicals Cat#NBP2-23375
AMPKγ1 Novus Biologicals Cat#NBP-23377
ULK protein Thermo Fisher Cat# PV6430
SAMS peptide Promega Cat#V1921
Tetramethylrhodamine Thermo Fisher Cat# T669
Dulbecco’s Modified Eagle’s Medium w/o inositol MP Biomedicals Cat# 091642954
[3H]AMP American Radiolabeled Chemicals Inc. Cat#ART0843
[3H]inositol American Radiolabeled Chemicals Inc. Cat#ART0261
Critical commercial assays
K-INOSL Assay Kit Megazyme Cat#820517
Glucose-6-Phosphate Colorimetric Assay Kit BioVision Cat#K657
ATP Determination Kit Thermal Fisher Cat#A22066
ADP-Glo kinase assay Promega Cat#V6930
Experimental models: Cell lines
Human: PC3 ATCC Cat#CRL-1435
Human: DU145 ATCC Cat#HTB-81
Mouse: mouse embryonic fibroblasts ATCC Cat#SCRC-1008
Mouse: AMPK−/− mouse embryonic fibroblasts Dr. Kun-Liang Guan (The University of California, San Diego) N/A
Experimental models: Organisms/Strains
Mouse: B6SJL.SOD1-G93A The Jackson Laboratory JAX: 002726
Mouse: C57BL/6J The Jackson Laboratory JAX: 000664
Oligonucleotide
ShRNA: human IMPA1-#1 Sigma-Aldrich Cat#TRCN0000310192
ShRNA: human IMPA1-#2 Sigma-Aldrich Cat#TRCN0000296135
ShRNA: mouse IMPA1-#1 Sigma-Aldrich Cat#TRCN0000081409
ShRNA: mouse IMPA1-#2 Sigma-Aldrich Cat#TRCN0000306604
ShRNA: human IMPA2-#1 Sigma-Aldrich Cat#TRCN0000050318
ShRNA: human IMPA2-#2 Sigma-Aldrich Cat#TRCN0000050320
ShRNA: human CDIPT-#1 Sigma-Aldrich Cat#TRCN0000035987
ShRNA: human CDIPT-#2 Sigma-Aldrich Cat#TRCN0000035988
ShRNA: human INPP1-#1 Sigma-Aldrich Cat#TRCN0000051600
ShRNA: human INPP1-#2 Sigma-Aldrich Cat#TRCN0000051601
ShRNA: human PI4K2α-#1 Sigma-Aldrich Cat#TRCN0000195093
ShRNA: human PI4K2α-#2 Sigma-Aldrich Cat#TRCN0000037605
ShRNA: human PLCβ1-#1 Sigma-Aldrich Cat#TRCN0000226441
ShRNA: human PLCβ1-#2 Sigma-Aldrich Cat#TRCN0000226442
ShRNA: human AMPKα1 Sigma-Aldrich Cat#TRCN0000199831
ShRNA: human AMPKα2 Sigma-Aldrich Cat#TRCN0000219690
Recombinant DNA
pGEX6P-1-AMPKα This paper N/A
pGEX6P-1-AMPKβ This paper N/A
pGEX6P-1-AMPKγ This paper N/A
pGEX6P-1-Bateman domain 1 This paper N/A
pGEX6P-1-Bateman domain 2 This paper N/A
pGEX6P-1-CBS1 This paper N/A
pGEX6P-1-CBS2 This paper N/A
pGEX6P-1-CBS3 This paper N/A
pGEX6P-1-CBS4 This paper N/A
pFLAG-CMV-2-IMPA1 This paper N/A
pFLAG-CMV-2-IMPA1 D220A This paper N/A
pFLAG-CMV-2-IMPA1 W219A This paper N/A
Software and algorithms
ImageJ ImageJ software https://imagej-nih-gov.go.libproxy.wakehealth.edu/ij/index.html
Fiji Fiji software https://imagej.net/Fiji
Graphpad Prism 8 Graphpad software N/A
CRISPR Design tool Zhang Lab https://zlab.bio/guide-design-resources
Deposited Data
Unprocessed images This paper http://dx.doi.org/10.17632/nvf6fgc77g.1