Antibodies
|
IMPA1 (clone H-7) |
Santa Cruz Biotechnology |
Cat#sc-374234; RRID: AB_10988246 |
Mff (clone B-2) |
Santa Cruz Biotechnology |
Cat# sc-398617; RRID: AB_2744543 |
phospho-Mff Ser146 (polyclone) |
Cell Signaling Tech |
Cat#49281; RRID: AB_2799354 |
IMPA2 (polyclone) |
GeneTex |
Cat#GTX103636; RRID: AB_1950587 |
AMPKα (polyclone) |
Cell Signaling Tech |
Cat#2532; RRID: AB_330331 |
AMPKβ (polyclone) |
Cell Signaling Tech |
Cat#12063; RRID: AB_ 2797812 |
AMPKγ (polyclone) |
Cell Signaling Tech |
Cat#4187; RRID: AB_10695248 |
phospho-AMPKα T172 (clone D4D6D) |
Cell Signaling Tech |
Cat#50081; RRID: AB_2799368 |
PKA (clone A-2) |
Santa Cruz, sc-28315 |
Cat#sc-28315; RRID: AB_628136 |
phospho-Drp1 S616 (polyclone) |
Cell Signaling Tech |
Cat#3455; RRID: AB_2085352 |
phospho-Drp1 S635 (clone D3A4) |
Cell Signaling Tech |
Cat#6319; RRID: AB_10971640 |
Fis (clone B-5) |
Santa Cruz Biotechnology |
Cat#sc-376447; RRID: AB_11149382 |
Mfn1 (clone D-10) |
Santa Cruz Biotechnology |
Cat#sc-166644; RRID: AB_2142616 |
Mfn2 (clone F-5) |
Santa Cruz Biotechnology |
Cat#sc-515647; RRID: AB_2811176 |
ULK (clone D8H5) |
Cell Signaling Tech |
Cat#8054; RRID: AB_11178668 |
Raptor (clone 24C12) |
Cell Signaling Tech |
Cat#2280; RRID: AB_561245 |
phospho-ULK S555 (clone D1H4) |
Cell Signaling Tech |
Cat#5869; RRID: AB_10707365 |
phospho-Raptor S792 (polyclone) |
Cell Signaling Tech |
Cat#2083, RRID: AB_2249475 |
Actin (clone AC-15) |
Sigma-Aldrich |
Cat#A5441, RRID: AB_476744 |
GAPDH (clone GAPDH-71.1) |
Sigma-Aldrich |
Cat#G8795, RRID: AB_1078991 |
Tubulin (clone AA13) |
Sigma-Aldrich |
Cat#T8203, RRID: AB_1841230 |
CDIPT (clone C-2) |
Santa Cruz Biotechnology |
Cat#sc-514255 |
GST (clone B-14) |
Santa Cruz Biotechnology |
Cat#sc-138, RRID: AB_627677 |
LC3 α/β (polyclone) |
Novus |
Cat#NB100-2220, RRID: AB_10003146 |
Calcineurin (D-1) |
Santa Cruz Biotechnology |
Cat#sc-373803, RRID: AB_10917925 |
MiD51 (clone A-6) |
Santa Cruz Biotechnology |
Cat#sc-514135 |
CREB (clone 24H2B) |
Santa Cruz Biotechnology |
Cat#sc-271, RRID: AB_627300 |
phospho-CREB S133 (clone 10E9) |
Santa Cruz Biotechnology |
Cat#sc-81486, RRID: AB_1125727 |
choactase (clone E-7) |
Santa Cruz Biotechnology |
Cat#sc-55557, RRID: AB_2291743 |
TOM20 (monoclone) |
Abcam |
Cat#ab56783, RRID: AB_945896 |
HRP-coupled antibodies to mouse |
Santa Cruz Biotechnology |
Cat#sc-2055, RRID: AB_631738 |
HRP-coupled antibodies to rabbit |
Thermo Fisher |
Cat#31480, RRID: AB_228457 |
Alexa Fluor 488 anti-mouse IgG |
Thermo Fisher |
Cat#A-21202, RRID: AB_141607 |
Rabbit normal IgG |
Santa Cruz Biotechnology |
Cat#sc-2027; RRID: AB_737197 |
Mouse Anti-rabbit IgG |
Cell Signaling Tech |
Cat#45262; RRID: AB_2799281 |
Chemicals and recombinant proteins
|
lithium chloride |
Millipore |
Cat#5910 |
AICAR |
Sigma-Aldrich |
Cat#A9978 |
A769662 |
Reagents Direct |
Cat#A769662 |
Compound C |
Sigma-Aldrich |
Cat#P5499 |
Myo-inositol |
Sigma-Aldrich |
Cat#I7508 |
AMP |
Sigma-Aldrich |
Cat#A1752 |
ATP |
Sigma-Aldrich |
Cat#A2383 |
BIO |
Selleckchem.com
|
Cat#S7198 |
L-α-Phosphatidylinositol |
Sigma-Aldrich |
Cat#P6636 |
myo-Inositol 1,4,5-trisphosphate hexapotassium salt |
Tocris |
Cat#1482 |
phosphatidylinositol 3,4,5-triphosphate |
Echelon®
|
Cat#P-3924 |
AMPKα1, β1, γ1 protein |
Millipore |
Cat#14-840 |
AMPKα1, β1, γ1 protein |
Promega |
Cat#V1921 |
AMPKα1, β2, γ1 protein |
Thermo Fisher |
Cat#PV6244 |
AMPKα2, β1, γ1 protein |
BPS Bioscience |
Cat#40024 |
AMPKα2, β2, γ1 protein |
Thermo Fisher |
Cat#PV6247 |
AMPKα1 |
Novus Biologicals |
Cat#NBP2-51992 |
AMPKβ1 |
Novus Biologicals |
Cat#NBP2-23375 |
AMPKγ1 |
Novus Biologicals |
Cat#NBP-23377 |
ULK protein |
Thermo Fisher |
Cat# PV6430 |
SAMS peptide |
Promega |
Cat#V1921 |
Tetramethylrhodamine |
Thermo Fisher |
Cat# T669 |
Dulbecco’s Modified Eagle’s Medium w/o inositol |
MP Biomedicals |
Cat# 091642954 |
[3H]AMP |
American Radiolabeled Chemicals Inc. |
Cat#ART0843 |
[3H]inositol |
American Radiolabeled Chemicals Inc. |
Cat#ART0261 |
Critical commercial assays
|
K-INOSL Assay Kit |
Megazyme |
Cat#820517 |
Glucose-6-Phosphate Colorimetric Assay Kit |
BioVision |
Cat#K657 |
ATP Determination Kit |
Thermal Fisher |
Cat#A22066 |
ADP-Glo™ kinase assay |
Promega |
Cat#V6930 |
Experimental models: Cell lines
|
Human: PC3 |
ATCC |
Cat#CRL-1435 |
Human: DU145 |
ATCC |
Cat#HTB-81 |
Mouse: mouse embryonic fibroblasts |
ATCC |
Cat#SCRC-1008 |
Mouse: AMPK−/− mouse embryonic fibroblasts |
Dr. Kun-Liang Guan (The University of California, San Diego) |
N/A |
Experimental models: Organisms/Strains
|
Mouse: B6SJL.SOD1-G93A |
The Jackson Laboratory |
JAX: 002726 |
Mouse: C57BL/6J |
The Jackson Laboratory |
JAX: 000664 |
Oligonucleotide
|
ShRNA: human IMPA1-#1 |
Sigma-Aldrich |
Cat#TRCN0000310192 |
ShRNA: human IMPA1-#2 |
Sigma-Aldrich |
Cat#TRCN0000296135 |
ShRNA: mouse IMPA1-#1 |
Sigma-Aldrich |
Cat#TRCN0000081409 |
ShRNA: mouse IMPA1-#2 |
Sigma-Aldrich |
Cat#TRCN0000306604 |
ShRNA: human IMPA2-#1 |
Sigma-Aldrich |
Cat#TRCN0000050318 |
ShRNA: human IMPA2-#2 |
Sigma-Aldrich |
Cat#TRCN0000050320 |
ShRNA: human CDIPT-#1 |
Sigma-Aldrich |
Cat#TRCN0000035987 |
ShRNA: human CDIPT-#2 |
Sigma-Aldrich |
Cat#TRCN0000035988 |
ShRNA: human INPP1-#1 |
Sigma-Aldrich |
Cat#TRCN0000051600 |
ShRNA: human INPP1-#2 |
Sigma-Aldrich |
Cat#TRCN0000051601 |
ShRNA: human PI4K2α-#1 |
Sigma-Aldrich |
Cat#TRCN0000195093 |
ShRNA: human PI4K2α-#2 |
Sigma-Aldrich |
Cat#TRCN0000037605 |
ShRNA: human PLCβ1-#1 |
Sigma-Aldrich |
Cat#TRCN0000226441 |
ShRNA: human PLCβ1-#2 |
Sigma-Aldrich |
Cat#TRCN0000226442 |
ShRNA: human AMPKα1 |
Sigma-Aldrich |
Cat#TRCN0000199831 |
ShRNA: human AMPKα2 |
Sigma-Aldrich |
Cat#TRCN0000219690 |
Recombinant DNA
|
pGEX6P-1-AMPKα |
This paper |
N/A |
pGEX6P-1-AMPKβ |
This paper |
N/A |
pGEX6P-1-AMPKγ |
This paper |
N/A |
pGEX6P-1-Bateman domain 1 |
This paper |
N/A |
pGEX6P-1-Bateman domain 2 |
This paper |
N/A |
pGEX6P-1-CBS1 |
This paper |
N/A |
pGEX6P-1-CBS2 |
This paper |
N/A |
pGEX6P-1-CBS3 |
This paper |
N/A |
pGEX6P-1-CBS4 |
This paper |
N/A |
pFLAG-CMV-2-IMPA1 |
This paper |
N/A |
pFLAG-CMV-2-IMPA1 D220A |
This paper |
N/A |
pFLAG-CMV-2-IMPA1 W219A |
This paper |
N/A |
Software and algorithms
|
ImageJ |
ImageJ software |
https://imagej-nih-gov.go.libproxy.wakehealth.edu/ij/index.html
|
Fiji |
Fiji software |
https://imagej.net/Fiji
|
Graphpad Prism 8 |
Graphpad software |
N/A |
CRISPR Design tool |
Zhang Lab |
https://zlab.bio/guide-design-resources
|
Deposited Data
|
Unprocessed images |
This paper |
http://dx.doi.org/10.17632/nvf6fgc77g.1
|