Table 1.
Nominally significant case–control association test results: All-JIA sample
| Chr | Position | dbSNP ID | Alleles | Gene (region) | MAF | P | OR | 95% CI | |
|---|---|---|---|---|---|---|---|---|---|
| (Ref/Alt) | |||||||||
| Cases | Controls | ||||||||
| 1 | 18,013,430 | rs12742364 | T/A | PADI4 | 0,096 | 0,154 | 5,06 × 10−5 | 0,583 | 0,434–0,782 |
| 2 | 33,218,037 | rs219158 | A/G | LTBP1 | 0,513 | 0,413 | 9,45 × 10−6 | 1,498 | 1,258–1,783 |
| 6 | 106,629,698 | rs182399829 | A/T | PRDM1 | 0,400 | 0,327 | 7,23 × 10−5 | 1,371 | 1,148–1,638 |
| 6 | 106,651,006 | rs73776556 | C/T | ATG5 | 0,389 | 0,315 | 3,20 × 10−5 | 1,389 | 1,161–1,661 |
| 7 | 37,157,641 | rs2111035 | C/A | ELMO1 | 0,245 | 0,160 | 1,05 × 10−5 | 1,703 | 1,389–2,087 |
| 8 | 122,539,123 | rs1564569 | A/G | HAS2 | 0,337 | 0,251 | 2,47 × 10−5 | 1,510 | 1,255–1,817 |
| 10 | 53,762,921 | rs2454539 | C/T | PRKG1 | 0,513 | 0,413 | 2,54 × 10−6 | 1,501 | 1,261–1,787 |
| 22 | 24,420,128 | rs9624387 | C/T | CABIN1 | 0,062 | 0,031 | 3,74 × 10−5 | 2,066 | 1,429–2,985 |
Chr chromosome; MAF minor allele frequency; OR odds ratio; CI confidence intervals