KEY RESOURCES TABLE
| Resource Type | Specific Reagent or Resource | Source or Reference | Identifiers | Additional Information |
|---|---|---|---|---|
| Add additional rows as needed for each resource type | Include species and sex when applicable. | Include name of manufacturer, company, repository, individual, or research lab. Include PMID or DOI for references; use “this paper” if new. | Include catalog numbers, stock numbers, database IDs or accession numbers, and/or RRIDs. RRIDs are highly encouraged; search for RRIDs at https://scicrunch.org/resources. | Include any additional information or notes if necessary. |
| Deposited Data; Public Database | Human postmortem brain; 20 control subjects and 20 OUD subjects | RRID:SCR_000139 | ||
| Deposited Data; Public Database | Single-nuclei RNA-seq human postmortem brains, unaffected subjects | https://github.com/LieberInstitute/10xPilot_snRNAseq-human | ||
| Software; Algorithm | R | The R Project for Statistical Computing | RRID:SCR_001905 | |
| Software; Algorithm | Metascape | http://metascape.org/gp/index.html#/main/step1 | RRID:SCR_016620 | |
| Software; Algorithm | Cytoscape 3.8.0 | http://cytoscape.org | RRID:SCR_003032 | |
| Software; Algorithm | Ingenuity Pathway Analysis | http://www.ingenuity.com/products/pathways_analysis.html | RRID:SCR_008653 | |
| Software; Algorithm | HOMER | http://homer.ucsd.edu/ | RRID:SCR_010881 | |
| Software; Algorithm | MetaseqR | http://www.bioconductor.org/packages/release/bioc/html/metaSeq.html | RRID:SCR_000056 | |
| Software; Algorithm | RRHO2 | PMID: 29942049 | ||
| Software; Algorithm | AUCELL | https://bioconductor.org/packages/release/bioc/html/AUCell.html | ||
| Software; Algorithm | ARACNE | http://wiki.c2b2.columbia.edu/califanolab/index.php/Software/ARACNE | RRID:SCR_002180 | |
| Software; Algorithm | GSEA | http://www.broadinstitute.org/gsea/ | RRID:SCR_003199 |