Table 4.
Estimation of evolutionary divergence (π) and nonsynonymous and synonymous substitutions mean dissimilarity (ω = dN/dS) for each phylogenetic clade of Cucurbita eNLR genes
| NLR-CDSsA | NLRs (n.) | Π | SLACC | |||
|---|---|---|---|---|---|---|
| ω | PSCs (n.) | NSCs (n.) | ||||
| Clade | CNL1 | 28 | 0,061 | 0,62 | 6 | 44 |
| CNL3 | 17 | 0,039 | 0,53 | 0 | 12 | |
| CNL4 | 8 | 0,114 | 0,9 | 0 | 3 | |
| CNL5 | 13 | 0,075 | 1,2 | 0 | 0 | |
| CNL6 | 9 | 0,151 | 0,94 | 0 | 0 | |
| RNL1 | 29 | 0,075 | 0,51 | 6 | 31 | |
| RNL2 | 27 | 0,159 | 0,48 | 1 | 49 | |
| TNL1 | 9 | 0,035 | 0,51 | 0 | 7 | |
| GroupB | CNL | 77 | 0,048 | 0,56 | 21 | 98 |
| RNL | 56 | 0,094 | 0,49 | 13 | 67 | |
ADatasets of analyzed NLR-coding DNA sequences (eNLR-CDSs)
BClade TNL1 coincide with TNL group
CNumber of positive (PSCs: positively selected codon sites) and negative (NSCs: negatively selected codon sites) codons statistically significant in coding DNA sequences