Table 1.
Four experimental and two simulated sequencing datasets of human immunodeficiency virus type 1 (HIV-1) and IAV
| Name | Type | Virus | #haplotypes | Haplotype frequencies | Hamming distance |
|---|---|---|---|---|---|
| HIV9exp | experimental | HIV-1 | 9 | 0.2-50% | 0.22-2.1% |
| HIV2exp | experimental | HIV-1 | 2 | 50-50% | 1.2% |
| HIV5exp | experimental | HIV-1 | 5 | 20-20% | 2-3.5% |
| IAV10exp | experimental | IAV | 10 | 0.1-50% | 0.1-1.1% |
| HIV7sim | simulated | HIV-1 | 7 | 14.3-14.3% | 0.6-3% |
| IAV10sim | simulated | IAV | 10 | 0.1-50% | 0.1-1.1% |
The datasets contain MiSeq and PacBio reads from intra-host viral populations consisting of two to ten variants each with frequencies in the range of 0.1–50%, and Hamming distances between variants in the range of 0.1–3.5%.