Table 2.

Full-length viral genome datasets

Name	Type	Virus	#haplotypes	Haplotype frequencies	Hamming distance	Region length
HCV10sim	simulated	HCV	10	5–13%	6–9%	8992
ZIKV3sim	simulated	ZIKV	3	16–60%	3–10%	9929
ZIKV15sim	simulated	ZIKV	15	2–13%	1–12%	9929
HIV5full	experimental	HIV-1	5	20–20%	1–6%	9275

Three simulated sequencing datasets HCV10sim, ZIKV3sim, ZIKV15sim and one experimental sequencing dataset HIV5full.