Table 1.

Overview of 40 candidate TFs with the predicted location of the helix-turn-helix (HTH) domain

Gene name	Locus_tag (b_number)	Total length (AA)	TF Family type*	Relative HTH position#
yahB	b0316	310	LysR	3–29%
ybcM	b0546	265	AraC	80–99%
ybdO	b0603	300	LysR	3–30%
ybeF	b0629	317	LysR	8–33%
ybhD	b0768	317	LysR	1.2–35%
ycaN	b0900	302	LysR	1–37%
ycfQ	b1111	210	TetR	5–39%
yciT	b1284	249	DeoR	1–24%
ycjW	b1320	332	GalR/LacI	0–17%
ydcN	b1434	178	N/A*	2–40%
ydcR	b1439	468	GntR	0–15%
ydhB	b1659	310	LysR	2–28%
ydiP	b1696	303	AraC	77–94%
yeaM	b1790	273	AraC	72–94%
yebK	b1853	289	N/A*	0–28%
yedW	b1969	223	CheY	0–56%
yeeY	b2015	309	LysR	2–28%
yehT	b2125	239	CheY	0–51%
yfeC	b2398	114	N/A*	0–50%
yfeD	b2399	130	N/A*	4–63%
yfiE	b2577	293	LysR	0–29%
yfjR	b2634	233	N/A*	N/A
ygaV	b2667	99	N/A*	11–99%
ygbI	b2735	255	DeoR	2–23%
ygeR	b2865	251	N/A*	N/A
ygfI	b2921	298	LysR	3–29%
yggD	b2929	169	N/A*	N/A
yhjB	b3520	200	LuxR	N/A
yhjC	b3521	299	LysR	1–28%
yiaU	b3585	324	LysR	2–35%
yidL	b3680	297	AraC	80–96%
yidZ	b3711	319	LysR	2–25%
yihL	b3872	236	GntR	1–31%
yihW	b3884	261	DeoR	3–31%
yjhI	b4299	262	IclR	3–29%
yjjJ	b4385	443	N/A*	N/A
yneJ	b1526	293	LysR	0–37%
ynfL	b1595	297	LysR	1–30%
ypdC	b2382	285	AraC	82–99%
yqhC	b3010	318	AraC	82–98%

Note, TF Family type* was annotated by the Hidden Markov Model (37).

N/A* indicates no annotation due to the lack of structural information.

Relative HTH position^# was calculated by the position of a HTH domain at the full length of protein sequence. N/A^# indicates the absence of a HTH domain in a given protein.