Table 1.
Compared with RepeatMasker, LongRepMarker found new repeat families and their detailed numbers on the Human-chr14 dataset
Human-chr14 | ||
---|---|---|
Super-Family | Family | amount |
LTR | ERVL-MaLR | 2 |
LTR | ERV1 | 4 |
LTR | Gypsy | 6 |
LTR | Pao | 1 |
LTR | Copia | 4 |
LTR | ERVK | 1 |
LTR | ERVL | 1 |
LINE | L1 | 7 |
LINE | R2-NeSL | 1 |
LINE | L2 | 3 |
DNA | MULE-MuDR | 1 |
DNA | hAT-Charlie | 3 |
DNA | PiggyBac | 1 |
DNA | CMC-EnSpm | 2 |
DNA | MuLE-MuDR | 1 |
DNA | Ginger | 1 |
DNA | Other | 1 |
SINE | MIR | 2 |
scRNA | - | 1 |
Simple_repeat | - | 2 |
Satellite | telomeric | 1 |
Unknown | - | 2551 |