Table 3.
General resources and databases with viral HPI data. These databases were last accessed in June 2021.
| Database | Interaction Type(s) | URL | Description |
|---|---|---|---|
| Viruses.STRING | Protein–protein |
http://viruses.string-db.org/ (accessed on 30 June 2021) |
Catalog of virus–host PPI |
| HVIDB | Protein–protein |
http://zzdlab.com/hvidb/ (accessed on 30 June 2021) |
Annotated human–virus PPI |
| P-HIPSTer | Protein–protein |
http://phipster.org/ (accessed on 30 June 2021) |
PPI predicted from PDB structure data |
| VirusMentha | Protein–protein |
https://virusmentha.uniroma2.it/ (accessed on 30 June 2021) |
Regularly updated PPI |
| Virus MINT | Protein–protein |
https://maayanlab.cloud/Harmonizome/resource/Virus+MINT (accessed on 30 June 2021) |
5000 PPI covering 110 viral strains |
| HPIDB 3.0 | RNA–RNA, protein–protein |
https://hpidb.igbb.msstate.edu/ (accessed on 30 June 2021) |
69,787 annotated and predicted interactions |