TABLE 4.
Magnitude of changes for mRNAs with CKI scores of >+0.90
| ORF | Gene | CKI score | Avg fold change in mRNA accumulation ± SDa |
|---|---|---|---|
| YOL108C | INO4 | 0.91 | 2.2 ± 0.7 |
| YDL243c | 0.91 | 2.5 ± 0.6 | |
| YER186c | 0.91 | 2.4 ± 0.5 | |
| YEL049w | PAU2 | 0.91 | 2.6 ± 0.8 |
| YDR387C | 0.91 | 3.1 ± 0.8 | |
| YKR069W | 0.91 | 3.2 ± 0.5 | |
| YFR020W | 0.91 | 3.3 ± 0.9 | |
| YEL048c | 0.91 | 5.4 ± 2.9 | |
| YPL258C | 0.91 | 6.5 ± 3.0 | |
| YNL339C | 0.93 | 2.0 ± 0.3 | |
| YFL035C | 0.94 | 1.9 ± 0.4 | |
| YHL050C | 0.94 | 1.9 ± 0.4 | |
| YJL223C | 0.94 | 2.0 ± 0.3 | |
| YLR251W | 0.94 | 1.9 ± 0.4 | |
| YLL066c | 0.94 | 1.9 ± 0.3 | |
| YLR152c | 0.94 | 2.0 ± 0.4 | |
| YIR020C | 0.94 | 2.7 ± 0.7 | |
| YOR202W | HIS3 | 0.94 | 2.3 ± 0.4 |
| YHL047C | 0.94 | 2.6 ± 0.5 | |
| YHR199C | 0.94 | 2.5 ± 0.4 | |
| YKL224C | 0.94 | 2.6 ± 0.3 | |
| YGR040W | KSS1 | 0.94 | 2.7 ± 0.9 |
| YBR301w | 0.94 | 3.0 ± 0.4 | |
| YLR122c | 0.94 | 3.7 ± 1.9 | |
| YGL261C | 0.94 | 3.3 ± 0.9 | |
| YDL243c | 0.94 | 2.5 ± 0.6 | |
| YNR059W | 0.94 | 4.0 ± 2.7 | |
| YOL165C | 0.94 | 3.7 ± 1.3 | |
| YMR320W | 0.94 | 4.4 ± 1.7 | |
| YKR012C | 0.94 | 4.5 ± 1.9 | |
| YMR065W | 0.94 | 4.8 ± 2.3 | |
| YMR316C-b | 0.94 | 4.0 ± 1.1 | |
| YLL067c | 0.97 | 2.0 ± 0.5 | |
| YPL144W | 0.97 | 2.5 ± 0.5 | |
| YCR096c | A2 | 0.97 | 2.8 ± 0.5 |
| YFL057C | 0.97 | 2.9 ± 0.6 | |
| YNL270C | ALP1 | 0.97 | 3.3 ± 1.4 |
| YKL071W | 0.97 | 4.6 ± 1.9 | |
| YIR031C | DAL7 | 0.97 | 4.5 ± 1.0 |
| YER180C | ISC10 | 0.97 | 4.7 ± 1.4 |
| YFL020C | PAU5 | 0.97 | 3.7 ± 0.9 |
| YER076c | 0.97 | 3.9 ± 0.6 | |
| YER187w | 0.97 | 4.3 ± 1.3 | |
| YER188w | 0.97 | 4.5 ± 1.2 | |
| YFL061W | 0.97 | 4.2 ± 2.4 | |
| YLL060c | 0.97 | 4.9 ± 2.2 | |
| YLL064c | 1.0 | 2.2 ± 0.5 | |
| YCR039c | ALPHA2 | 1.0 | 2.6 ± 0.3 |
| YCL067c | ALPHA2 | 1.0 | 2.6 ± 0.3 |
| YKR061W | KTR2 | 1.0 | 2.5 ± 0.4 |
| YLR461W | PAU4 | 1.0 | 2.5 ± 1.0 |
| YDR210W | 1.0 | 2.1 ± 0.3 | |
| YBL113C | 1.0 | 2.2 ± 0.4 | |
| YLL025w | 1.0 | 2.8 ± 0.6 | |
| YML133C | 1.0 | 2.3 ± 0.7 | |
| YNL046W | 1.0 | 2.8 ± 1.3 | |
| YER092w | 1.0 | 2.5 ± 0.3 | |
| YER115C | spr6 | 1.0 | 2.7 ± 0.6 |
| YCR020C | PET18 | 1.0 | 4.2 ± 0.8 |
| YLR010c | 1.0 | 3.3 ± 0.7 | |
| YGR289C | AGT1 | 1.0 | 3.1 ± 0.7 |
| YLR460C | 1.0 | 3.1 ± 0.7 | |
| YBR008c | 1.0 | 3.9 ± 0.7 | |
| YHL046C | 1.0 | 3.3 ± 0.6 | |
| YGL193C | 1.0 | 4.0 ± 1.2 | |
| YCR102c | 1.0 | 3.9 ± 1.3 | |
| YAR023C | 1.0 | 4.0 ± 0.7 | |
| YGL263W | 1.0 | 4.2 ± 1.0 | |
| YEL028w | 1.0 | 4.2 ± 1.6 | |
| YER066w | 1.0 | 4.4 ± 1.6 | |
| YNL162W | RPL41A | 1.0 | 4.2 ± 1.1 |
| YNL335W | 1.0 | 4.9 ± 4.0 | |
| YFR026C | 1.0 | 5.1 ± 1.8 | |
| YOL162W | 1.0 | 6.7 ± 2.7 | |
| YGL262W | 1.0 | 8.2 ± 2.8 | |
| YEL073c | 1.0 | 11.0 ± 4.4 | |
| YIR043C | 1.0 | 9.4 ± 3.4 |
a
Averaged across all four trials for all four upf− strains (a total of 16 trials).