Table 3.
Gene ID | Gene Name * | pl vs. WT | Gene Description | Pathway/Function Involved | |
---|---|---|---|---|---|
RNA-seq log2 fold change | qRT PCR fold change | ||||
Os02g0626100 | OsPAL1 | 3.19286832 | 3.01 ± 0.01 | Similar to Phenylalanine ammonia-lyase | Anthocyanin Biosynthesis |
Os02g0626400 | OsPAL2 | 2.10996231 | 1.93 ± 0.03 | Phenylalanine ammonia-lyase | Phenylpropanoid metabolism, Anthocyanin Biosynthesis |
Os04g0518400 | OsPAL6 | 5.02738052 | 3.10 ± 0.19 | Similar to Phenylalanine ammonia-lyase | Phenylpropanoid metabolism, Anthocyanin Biosynthesis |
Os05g0427400 | OsPAL7 | 3.03883343 | 1.25 ± 0.10 | Similar to Phenylalanine ammonia-lyase | Phenylpropanoid metabolism |
Os02g0177600 | Os4CL3 | 1.82828648 | 1.19 ± 0.10 | 4-coumarate: coenzyme A ligase | Phenylpropanoid metabolism |
Os08g0448000 | Os4CL5 | 4.87114854 | 2.08 ± 0.14 | 4-coumarate: coenzyme A ligase 5 | Phenylpropanoid metabolism |
Os03g0122300 | OsF3H | 4.76468487 | 2.37 ± 0.24 | flavonol synthase | Flavonoid biosynthesis, Anthocyanin Biosynthesis |
Os08g0441500 | 4.4886503 | 3.93 ± 0.015 | cinnamoyl-CoA reductase | Phenylpropanoid metabolism, Anthocyanin Biosynthesis | |
Os05g0320700 | 1.8282864 | 1.65 ± 0.31 | cinnamate 4-hydroxylase 2 | Phenylpropanoid metabolism, Anthocyanin Biosynthesis | |
Os10g0512400 | OsCAld5H1; F5H1 | 3.1612775 | 2.57 ± 0.15 | coniferaldehyde 5-hydroxylase 1, ferulate 5-hydroxylase 1 | Lignin biosynthesis |
Os01g0196300 | DPF; OsbHLH025 | 5.6010349 | 3.65 ± 0.020 | basic helix-loop-helix protein 025 | |
Os01g0838350 | Phosphate-limitation inducible gene 1 | −1.0446037 | −0.59 ± 0.09 | Conserved hypothetical protein | |
Os01g0734800 | 1.120071 | 1.65 ± 0.10 | anthocyanidin 5,3-O-glucosyltransferase | Anthocyanin Biosynthesis | |
Os11g0116300 | 2.70218828 | 2.25 ± 0.02 | chalcone isomerase | Anthocyanin Biosynthesis | |
Os02g0611800 | 2.38197885 | 1.26 ± 0.08 | Hydroxycinnamoyltransferase 2 | Phenylpropanoid and Flavonoid biosynthesis | |
Os02g0194700 | OsLOX1 | −2.9658063 | −0.68 ± 0.06 | Lipoxygenase 1 | |
Os11g0610700 | OsWD40-190 | 1.2940596 | 1.71 ± 0.10 | WD40 repeat-like domain containing protein | |
Os07g0543100 | −2.9658063 | −0.30 ± 0.01 | Beta-amylase 1 | ||
Os02g0738100 | 3.24756852 | 1.19 ± 0.13 | basic helix-loop-helix protein | ||
Os04g0662600 | 4.492093 | 1.66 ± 0.07 | Flavanone 3-hydroxylase 1 | Flavonoid biosynthesis |
* Gene IDs are arranged following the gene order of the anthocyanin biosynthetic pathway.