Table 1.
Top 20 genes with the highest differential expression between PP and MP > 3 cows. Positive fold change (FC), more highly expressed in PP cows; negative FC (shaded), more highly expressed in MP > 3 cows
| Gene Symbol | Gene name | logFC | adj.p.value |
|---|---|---|---|
| NELL2 | neural EGFL like | −1.581 | 1.40E-63 |
| ZNF462 | zinc finger protein 462 | 1.931 | 1.79E-38 |
| PLCL1 | phospholipase C like 1 (inactive) | 1.042 | 2.45E-37 |
| IGF2BP3 | insulin like growth factor 2 mRNA binding protein 3 | 2.268 | 6.36E-37 |
| CNTNAP1 | contactin associated protein 1 | 1.675 | 2.85E-35 |
| SOX13 | SRY-box transcription factor 13 | 1.925 | 8.17E-35 |
| BLK | BLK proto-oncogene, Src family tyrosine kinase | 0.881 | 1.23E-32 |
| MYBL1 | MYB proto-oncogene like 1 | −0.771 | 1.93E-32 |
| CD163L1 | CD163 molecule like 1 | 1.463 | 6.55E-32 |
| WNT5A | Wnt family member 5A | 2.673 | 2.56E-31 |
| SCRN1 | secernin 1 | 1.129 | 5.03E-31 |
| LOC515828 | uncharacterised | 1.207 | 6.12E-30 |
| CSPG4 | chondroitin sulfate proteoglycan 4 | 2.831 | 8.30E-30 |
| DBN1 | drebrin 1 | 0.942 | 1.95E-29 |
| PTPRK | protein tyrosine phosphatase receptor type K | −3.301 | 2.00E-29 |
| LAMA4 | laminin subunit alpha 4 | 2.998 | 4.15E-29 |
| TCAF1 | TRPM8 channel associated factor 1 | 1.050 | 1.17E-28 |
| LOC751811 | WC1 isolate CH211 | 1.389 | 2.85E-28 |
| SOX4 | SRY-box transcription factor 4 | 0.820 | 3.69E-28 |
| LOC104969122 | uncharacterised | −1.396 | 9.97E-28 |