Table 1.

Ion Channel modeling and simulation studies. The references quoted in the table are readily found as referenced in article [24]. Here the general area of ion channels are organized according to the system type and computational models employed. “Reprinted (adapted) with permission from [24]”.

System	Method (We Quote Here the References, Numbered in ref. [24]. We Avoided to Relist the Huge Amount of References Here.)
	Continuum	Implicit Solvent MD	All-Atom MD	Hybrid	CG	Others (QM)
gramcidins	8–15	16, 17	18–31	52, 53		54
Other membrane porins	55–61	55, 62–64	55, 65–87	55
α-hemolysin	88–93	88, 90, 94, 95	90, 93, 96–99	90, 93, 100–102
K+ channels	103–109	110–117	29, 88, 111–113, 116–197	107, 198–202	203–206	207–211
nAChR			212–220
MscL/MscS	221–228	229, 225	230–257	225, 258	222, 258
Anion channels (VDAC, CIC)	259		260–264	265–268
Aquaporins			269–274
NH4+ transporter			275–278
Other channels	279–310	311–318	299, 312, 319–348	302, 330, 337, 349–356	357, 358
Synthetic nanopores	359–370	371–374	375–391	350, 382, 383, 392	393	394