Table 5.

Results of conditional association analyses for PUFA and P/S ratio using SNP markers in the 749.1 kb critical region in SSC12.

					PUFA				P/S Ratio
					Single-Marker Analysis		Conditional Analysis		Single-Marker Analysis		Conditional Analysis
No	1 BP	SNP annotation	2 Allele 1	3 r	4 b	5p-value	6 β	7p-value	4 b	5p-value	6 β	7p-value
1	12:54812172	intron-GAS7	T	−0.443	0.122	1.16 × 10−12	0.033	0.056	0.040	1.64 × 10−9	0.008	0.230
2	12:54842795	intron-GAS7	T	0.390	−0.066	0.0007	0.022	0.262	−0.020	0.0090	0.013	0.089
3	12:54901488	intron-GAS7	G	−0.382	0.056	0.0006	−0.006	0.723	0.014	0.0275	−0.009	0.160
4	12:54929793	intron-GAS7	G	0.638	0.141	7.24 × 10−22	0.039	0.010	0.052	1.92 × 10−20	0.016	0.007
5	12:54956054	intron-GAS7	C	*-	−0.233	1.03 × 10−39	**-	**-	−0.082	3.41 × 10−33	**-	**-
6	12:55073130	coding-MYH13	A	−0.581	0.127	1.08 × 10−13	0.005	0.769	0.042	5.65 × 10−10	−0.003	0.691
7	12:55093697	intron MYH13	A	−0.354	0.043	0.022	−0.027	0.153	0.010	0.157	−0.016	0.035
8	12:55120479	3′UTR MYH8	G	−0.548	0.112	1.58 × 10−11	0.004	0.795	0.042	1.11 × 10−10	0.002	0.743
9	12:55180513	3′UTR MYH4	G	−0.556	0.113	3.81 × 10−12	0.007	0.665	0.041	8.68 × 10−11	0.002	0.712
10	12:55229376	exon MYH2	G	0.996	−0.222	6.45 × 10−37	† NA	† NA	−0.078	1.89 × 10−30	† NA	† NA
11	12:55262653	exon MYH2	T	0.996	−0.231	4.27 × 10−39	† NA	† NA	−0.080	3.13 × 10−32	† NA	† NA
12	12:55351879	intron MYH3	A	0.702	0.163	1.18 × 10−22	0.015	0.376	0.060	3.49 × 10−20	0.007	0.287
13	12:55373617	5′UTR MYH3	G	0.866	−0.215	3.23 × 10−32	−0.024	0.225	−0.075	1.58 × 10−26	−0.008	0.280
14	12:55373707	5′UTR MYH3	2	0.999	−0.230	4.66 × 10−39	† NA	† NA	−0.081	1.07 × 10−32	† NA	† NA
15	12:55447604	intron ADPRM	G	0.626	−0.166	2.98 × 10−13	−0.004	0.877	−0.060	1.21 × 10−11	−0.0003	0.972
16	12:55463919	intron ADPRM	G	0.946	−0.224	7.37 × 10−37	−0.008	0.667	−0.080	9.11 × 10−32	−0.004	0.548
17	12:55475542	intron ADPRM	T	−0.630	0.139	9.59 × 10−21	0.036	0.018	0.051	2.38 × 10−19	0.015	0.013
18	12:55530321	intron ENSSSCG 00000044652	A	−0.101	0.082	6.51 × 10−3	0.049	0.108	0.035	0.0036	0.022	0.066
19	12:55561243	intron ENSSSCG 00000044652	T	0.106	−0.021	0.167	−0.004	0.779	−0.008	0.160	−0.002	0.716

¹ Physical map position of SNP markers in the 749.1 kb critical region in SSC12; ² reference allele; ³ LD correlation between the key SNP marker (shaded with grey color; the SNP at 12:54956054) and corresponding SNP marker; ⁴ regression coefficients computed from single-marker analysis; ⁵ p-values computed from single-marker analysis; ⁶ Regression coefficients calculated from conditional analysis; ⁷ p-values calculated from conditional analysis; bold characters represent SNP markers showing extremely high LD correlation with the key SNP marker. ^† Absence of regression coefficients and significance due to collinearity originated from extremely high LD with the key SNP marker. * We did not calculate the LD correlation because r is the correlation between the key SNP and other SNPs; ** We did not compute the 𝛃 and p-value of the key SNP marker in the conditional analysis.