Table 2.
Scenarios with different parameters for the detection of heterozygosity-rich regions (HRRs).
| Scenario | Consecutive SNPs | Density (SNP/kb) | Max Gap (kb) | Min Length (kb) | N Hom | N Miss | Hom Window | Miss Window | SNP Window |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10 | 1/70 | 1000 | 400 | 3 | 2 | 3 | 2 | 10 |
| 2 | 10 | 1/70 | 1000 | 250 | 3 | 2 | 3 | 2 | 10 |
| 3 | 10 | 1/70 | 1000 | 10 | 3 | 2 | 3 | 2 | 10 |
| 4 | 10 | 1/70 | 1000 | 250 | 2 | 2 | 2 | 2 | 10 |
| 5 | 10 | 1/70 | 1000 | 250 | 1 | 2 | 1 | 2 | 10 |
| 6 | 10 | 1/70 | 1000 | 250 | 1 | 1 | 1 | 1 | 10 |
| 7 | 5 | 1/70 | 1000 | 400 | 3 | 2 | 3 | 2 | 5 |
| 8 | 5 | 1/70 | 1000 | 250 | 3 | 2 | 3 | 2 | 5 |
| 9 | 5 | 1/70 | 1000 | 10 | 3 | 2 | 3 | 2 | 5 |
N hom = maximum number of homozygous SNPs allowed in an HRR, N miss = maximum number of missing SNPs allowed in an HRR, Hom window = maximum number of homozygous SNPs allowed in a window, Miss window = maximum number of missing SNPs allowed in a window, SNP window = number of SNPs in a window.