Table 3.

The annotations and methylation levels of key DMRs associated genes with holdfast, stipe and blade development.

Pathway	Gene ID	Gene Annotiation	B vs. H	B vs. S	H vs. S
Cell motility	EVM0003386	NB-ARC and TPR repeat-containing protein	●	●	●
	EVM0008642	NB-ARC and TPR repeat-containing protein	●	●	●
	EVM0007683	NB-ARC and TPR repeat-containing protein	●	●	●
	EVM0005188	NB-ARC and TPR repeat-containing protein	●	●	●
Cell cycle	EVM0004313	Cdc2-related protein kinase	●	●	●
	EVM0009233	Asn/thr-rich large protein family protein	●	●	●
Cell wall/membrane biogenesis	EVM0014756	Ankyrin repeat	●	●	●
	EVM0006136	D-isomer specific 2-hydroxyacid dehydrogenase	●	●	●
	EVM0015189	Zinc metalloprotease EGY3	●	●	●
	EVM0015061	Endo-1,3-beta-glucanase, family GH81	●	●	●
Intracellular trafficking, secretion, and vesicular transport	EVM0001662	Glycine dehydrogenase, mitochondrial	●	●	●
	EVM0006566	Plastid Ffh subunit of the signal recognition particle	●	●	●
	EVM0003888	Camkk-meta protein kinase	●	●	●
	EVM0015686	Small Conductance Mechanosensitive Ion channel	●	●	●
	EVM0004673	Uric acid-xanthine permease	●	●	●
	EVM0013751	Protein zinc induced facilitator1	●	●	●
Signal transduction	EVM0004728	Serine/threonine-protein kinase	●	●	●
	EVM0015398	Respiratory burst oxidase homolog protein B	●	●	●
	EVM0004327	Guanylyl cyclase	●	●	●

Pink and blue spots indicated the condition of hypermethylation and hypomethylation, respectively.