Table 1.
Preprocessing and alignment results of all nine samples.
| No. | Group | Sample ID | Number of Reads | Number of Good Reads (Percentage) | Overall Alignment Rate |
|---|---|---|---|---|---|
| 1 | Wt mice | VC1 | 21,622,102 | 20,743,123 (95.9%) | 93.51% |
| 2 | VC4 | 23,804,636 | 22,983,122 (96.5%) | 94.19% | |
| 3 | VC6 | 25,529,616 | 24,586,395 (96.3%) | 94.10% | |
| 4 | ADM mice | APP2 | 20,475,388 | 19,700,219 (96.2%) | 93.03% |
| 5 | APP4 | 20,315,569 | 19,541,861 (96.1%) | 91.00% | |
| 6 | APP6 | 24,571,206 | 23,772,655 (96.7%) | 93.35% | |
| 7 | ADM mice+C3G | C2 | 25,878,453 | 25,060,447 (96.8%) | 91.31% |
| 8 | C4 | 25,609,508 | 24,844,294 (97.01%) | 93.06% | |
| 9 | C6 | 24,938,833 | 24,141,244 (96.8%) | 92.61% | |
| 10 | All samples | Total: 212,745,311 Average: 23,638,367.8 |
Total: 205,373,360 | Mean: 92.906% |