. 2021 Sep 2;8(9):180. doi: 10.3390/vetsci8090180

Table 4.

Determination of SLA-1 codons under positive selection by the Bayes empirical Bayes (BEB) approach.

Loci	Population	Model	dN/dS Value	Significance ^a	Codons Predicted to Be under Positive Selection BEB Inference ^b
SLA-1 (exon 2)	All	M7 vs. M8	3.36	p < 0	6 , 15 , 53 , 57 , 58 , 61 , 64 , 68
	Exotic	M7 vs. M8	2.52	p < 0.001	6 , 15 , 36 , 53 , 57 , 58 , 65 , 68 *
	Local	M7 vs. M8	3.13	p < 0	15 , 36 , 53 , 56 , 57 , 58 , 59 *, 61 , 68 **
	Warthog	M7 vs. M8	4.55	p < 0	15 , 53 , 58 , 64 , 65 *
SLA-2	All	M7 vs. M8	5.37	p < 0	11 , 17 , 20 , 28 , 34 , 35 , 56 , 64 , 69 , 77 , 78 , 79 , 80 , 81 , 84 , 88 , 90 , 91 , 92 , 106 , 125 , 127 , 128 , 154 , 158 , 162 , 163 , 166 , 167 , 174 , 178 , 180 , 181 , 286 , 288 , 312 , 322 *, 345 , 350 , 351 *
	Exotic	M7 vs. M8	5.52	p < 0	17 , 20 , 34 , 35 , 56 , 74 , 78 , 79 , 80 , 81 , 84 , 88 , 90 *, 92 , 106 , 108 , 125 *, 127 , 158 *, 162 , 163 , 166 , 167 , 174 , 178 , 181 , 312 , 330 , 350 , 351 *
	Local	M7 vs. M8	7.72	p < 0	11 , 17 , 20 , 28 , 34 , 35 , 55 , 56 , 64 , 73 , 77 , 78 , 80 , 88 , 90 , 91 , 92 , 106 , 113 , 125 , 154 , 158 , 162 , 163 , 166 , 167 , 174 , 178, 180, 288 , 322 **
DQB1	All	M7 vs. M8	11.72	p < 0	8 , 31 , 35 , 40, 47 , 48 , 50 , 52 , 59 , 60 , 65 , 79 *, 85 , 88 , 93 , 99 , 204 , 242 **
	Exotic	M7 vs. M8	12.28	p < 0	8 , 31 , 35 *, 40 , 47 , 48 , 49 , 50 , 52 , 59 , 60 , 65 , 79 , 85 , 88 *, 89 , 93 , 204 *
	Local	M7 vs. M8	10.39	p < 0.00001	31 , 35 , 48 , 52 , 59 , 60 , 79 , 88 , 93 , 113 , 242 *

^a Significance was calculated by comparing the difference in the log likelihoods corresponding to the M7-M8 model. ^b Underlined are residues on the peptide-binding region (PBRs). * Posterior probability ≥ 0.95. ** Posterior probability ≥ 0.99.