Table 2.
Comparison of phylotype coverage and diversity estimation of the 16S rRNA gene libraries at 97% similarity from the sequencing analysis.
Group | No. of reads | No. of OTUs | Coverage (%) | Richness estimator | Diversity index | |||||
---|---|---|---|---|---|---|---|---|---|---|
ACE | 95% CI | Chao | 95% CI | Shannon | Simpson | Evenness | ||||
HC | 630,000 | 10,996 | 97.19 | 4257.84 | 4031.74–4506.03 | 3090.89 | 2840.24–3395.07 | 4.733331714 | 0.032098 | 0.354556683 |
MDD | 690,000 | 14,406 | 97.47 | 3762.74 | 3557.59–3989.13 | 2790.49 | 2562.74–3069.66 | 4.647938217 | 0.036133 | 0.34454694 |
GAD | 300,000 | 15,010 | 96.15 | 5978.93 | 5689.91–6291.70 | 4170.2 | 3857.99–4538.97 | 5.017976 | 0.025108 | 0.397936241 |
CI, confidence interval.