Table 1.
List of LD potential candidate variants that showed autosomal recessive inheritance pattern.
| Gene name | Chrom | ref | Alt | Effect | HGVS.c | HGVS.p | dbSNP151_ID | 1000G_AF | ExAC_AF | gnomAD_exomes_AF | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| (1) | ZC3H12A | chr1 | G | T | Missense | c.99G>T | p.Arg33Ser | rs116208741 | 0.00139776 | 0.002405 | 0.002499959 |
| (2) | ZC3H12A | chr1 | C | T | Missense | c.95C>T | p.Pro32Leu | rs115805535 | 0.00119808 | 0.002117 | 0.002117 |
| (3) | TMEM18A | chr7 | C | T | Missense | c.116G>A | p.Gly39Glu | rs183593116 | 0.00219649 | 0.004772 | 0.00515989 |
| (4) | CPNE7 | chr16 | C | T | Missense | c.898C>T | p.Pro300Ser | rs150443459 | 0.000399361 | 0.0002966 | 0.0003931566 |
| (5) | ASXL2 | chr2 | C | T | Missense | c.1489G>A | p.Ala497Thr | rs192716734 | 0.00139776 | 0.003805 | 0.004480134 |
| (6) | MYO1D | chr17 | G | A | Missense | c.2293C>T | p.Pro765Ser | rs7209106 | 0.0043 | 0.002759 | 0.002424917 |
| (7) | EPB42 | chr15 | C | T | Missense | c.1477G>A | p.Gly493Ser | rs148871144 | 0.000199681 | 0.0007578 | 0.0007836991 |
| (8) | FAM220A | chr7 | G | A | Missense | c.437C>T | p.Pro146Leu | rs75910050 | 0.00139776 | 0.0009884 | 0.0009261591 |
| (9) | OR10A2 | chr11 | C | A | Missense | c.741C>A | p.Phe247Leu | rs150322658 | 0.00119808 | 0.0014 | 0.001421724 |
LD, laterality defect.