Table 1.
Testing Sites, Platforms Used, and Study Phase Participation
| Laboratory # | Platform Used | Assays | Phase 1 | Phase 2 | cfDNA Extraction Kit Used |
|---|---|---|---|---|---|
| 1 | Droplet digital PCR | Bio-Rad EGFR assay and IDT (Integrated DNA Techonologies) designed primers and probes | X | X | QIAamp circulating nucleic acid kit |
| 2 | NGS (S5) | ThermoFisher Oncomine Lung cfDNA assay | X | X | QIAamp circulating nucleic acid kit |
| 3 | NGS | IlluminaTruSight Tumor 15 - TST15 panel | X | X | QIAamp circulating nucleic acid kit |
| 4 | Real-time PCR (Cobas 4800) | Cobas EGFR mutation test v2 | X | X | Cobas cfDNA sample preparation kit |
| 5 | Real-time PCR | Entrogen ctEGFR mutation detection kit | X | X | Nucleosnap kit for plasma DNA |
| 6 | Real-time PCR | Entrogen ctEGFR mutation detection kit | X | X | QIAamp circulating nucleic acid kit |
| 7 | Real-time PCR (Cobas 4800) | Cobas EGFR Mutation test v2 | X | X | Cobas cfDNA sample preparation kit |
| 8 | Real-time PCR (Cobas 4800) | Cobas EGFR mutation test v2 | X | Cobas cfDNA sample preparation kit | |
| 9 | Mass array | UltraSEEK lung panel | X | QIAamp circulating nucleic acid kit | |
| Reference laboratory | Droplet digital PCR | Bio-Rad EGFR assay and IDT designed primers and probes | X (1b only) | X | QIAamp circulating nucleic acid kit |
#, number; cfDNA, cell-free DNA; IDT, integrated DNA Technologies; NGS, next-generation sequencing; PCR, polymerase chain reaction.