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L2 RG1 epitope sequences compared between HPV types. The amino acid sequences at positions 20–31 of L2 capsid for HPV16/18/39/6 were analyzed by BLOSUM62 comparison matrix for alignment
| HPV type | RG1 20–31 a.a. sequence | % identity to HPV16 | Score to HPV16 |
|---|---|---|---|
| HPV16 | KTCKQAGTCPPD | n/a | n/a |
| HPV18 | KTCKQSGTCPPD | 91.70% | 70 |
| HPV39 | RTCKQSGTCPPD | 83.30% | 67 |
| HPV6 | QTCKLTGTCPPD | 75.00% | 58 |
