Table 3. Gene set enrichment analysis.

Gene set name	NES	NOM p-val	FDR q-val
HALLMARK_TNFA_SIGNALING_VIA_NFKB	1.74	0.024	0.046
HALLMARK_P53_PATHWAY	1.437	0.017	0.201
KEGG_GLUTATHIONE_METABOLISM	-1.545	0.039	0.192
KEGG_CALCIUM_SIGNALING_PATHWAY	-1.575	0.006	0.186
KEGG_WNT_SIGNALING_PATHWAY	-1.596	0.010	0.173
KEGG_TGF_BETA_SIGNALING_PATHWAY	-1.651	0.020	0.150
KEGG_MELANOGENESIS	-1.698	0.010	0.141
KEGG_LYSOSOME	-1.88	0.004	0.129

NES: normalized enrichment score; NOM: nominal; FDR: false discovery rate. Gene sets with NOM p-val <0.05 and FDR q-val <0.25 are considered as significant.