Table 1.
Platelet count polygenic risk score and correlation with human diseases and quantitative traits.
Trait | Iceland | UK | Combined | ||||||
---|---|---|---|---|---|---|---|---|---|
E | P | nAff/nCon | E | P | nAff/nCon | E (95% CI) | P | Phet | |
AS | 0.179 | 0.002 | 373/139,426 | 0.322 | 5.2 × 10−15 | 612/407,963 | 0.274 (0.208, 0.340) | 3.2 × 10−16 | 0.044 |
Hypertension | 0.021 | 0.017 | 32,026/110,632 | 0.020 | 4.4 × 10−6 | 77,566/331,087 | 0.020 (0.013, 0.028) | 2.3 × 10−7 | 0.92 |
RA | 0.129 | 4.3 × 10−7 | 1772/136,368 | 0.098 | 5.7 × 10−10 | 4001/404,652 | 0.107 (0.080, 0.133) | 2.1 × 10−15 | 0.32 |
MPN | 0.237 | 0.0017 | 180/141,889 | 0.209 | 0.00011 | 348/406,981 | 0.218 (0.132, 0.305) | 6.6 × 10−7 | 0.76 |
BPH | 0.018 | 0.2 | 9346/42,591 | 0.041 | 5.6 × 10−8 | 21,067/166,609 | 0.036 (0.023, 0.049) | 7.0 × 10−8 | 0.15 |
Trait | Beta | P | n | Beta | P | n | Beta (95% CI) | P | Phet |
PLT | 0.228 | 2.9 × 10−1558 | 139,489 | 0.326 | 3.8 × 10−6978 | 397,495 | 0.295 (0.292, 0.298) | 3.9 × 10−8334 | 5.1 × 10−531 |
MPV | −0.201 | 1.2 × 10−675 | 136,560 | −0.192 | 1.2 × 10−1865 | 397,490 | −0.194 (−0.198, −0.190) | 2.4 × 10−2538 | 1.9 × 10−5 |
WBC | 0.059 | 7.6 × 10−116 | 140,123 | 0.082 | 1.2 × 10−463 | 397,495 | 0.075 (0.072, 0.078) | 2.3 × 10−566 | 1.0 × 10−31 |
Lymphocyte count | 0.047 | 3.4 × 10−73 | 132,215 | 0.066 | 3.3 × 10−300 | 396,820 | 0.060 (0.057, 0.063) | 1.3 × 10−363 | 1.6 × 10−9 |
Basophil count | 0.027 | 4.2 × 10−64 | 131,881 | 0.026 | 3.2 × 10−60 | 396,820 | 0.026 (0.024, 0.029) | 2.2 × 10−122 | 0.66 |
Eosinophil count | 0.043 | 6.6 × 10−61 | 131,889 | 0.061 | 7.2 × 10−251 | 396,820 | 0.055 (0.052, 0.058) | 8.7 × 10−303 | 1.4 × 10−8 |
Monocyte count | 0.055 | 2.2 × 10−87 | 132,212 | 0.063 | 5.9 × 10−243 | 396,820 | 0.060 (0.057, 0.064) | 4.4 × 10−327 | 0.00012 |
Neutrophil count | 0.042 | 8.2 × 10−66 | 132,200 | 0.062 | 2.9 × 10−270 | 396,820 | 0.055 (0.052, 0.058) | 1.4 × 10−324 | 3.9 × 10−25 |
Triglycerides | 0.025 | 9.7 × 10−9 | 96,081 | 0.020 | 2.4 × 10−29 | 390,346 | 0.021 (0.017, 0.024) | 2.7 × 10−36 | 0.29 |
Total cholesterol | 0.023 | 2.2 × 10−7 | 102,393 | 0.012 | 2.1 × 10−9 | 390,652 | 0.014 (0.010, 0.017) | 3.2 × 10−14 | 0.024 |
Non-HDL cholesterol | 0.021 | 4.2 × 10−6 | 96,881 | 0.013 | 3.5 × 10−9 | 358,461 | 0.015 (0.011, 0.018) | 2.5 × 10−13 | 0.11 |
Heart rate | 0.022 | 2.1 × 10−6 | 55,042 | 0.015 | 1.9 × 10−17 | 385,917 | 0.016 (0.013, 0.019) | 5.9 × 10−22 | 0.16 |
Mean arterial pressure | 0.009 | 0.041 | 76,003 | 0.013 | 1.2 × 10−12 | 385,914 | 0.012 (0.009, 0.016) | 2.0 × 10−13 | 0.4 |
GGTP | 0.031 | 2.1 × 10−14 | 101,537 | 0.031 | 7.4 × 10−60 | 390,457 | 0.031 (0.028, 0.034) | 1.4 × 10−72 | 1 |
AP | 0.020 | 2.8 × 10−6 | 102,035 | 0.018 | 2.3 × 10−21 | 390,671 | 0.018 (0.015, 0.022) | 3.9 × 10−26 | 0.67 |
Bilirubin | −0.029 | 3.1 × 10−13 | 73,535 | −0.013 | 4.5 × 10−17 | 389,085 | −0.015 (−0.018, −0.012) | 1.2 × 10−25 | 0.00018 |
CRP | 0.013 | 5.7 × 10−5 | 115,557 | 0.019 | 2.2 × 10−24 | 389,840 | 0.018 (0.014, 0.021) | 2.3 × 10−27 | 0.11 |
Creatinine | −0.019 | 1.3 × 10−6 | 136,328 | −0.014 | 4.8 × 10−15 | 390,463 | −0.015 (−0.018, −0.012) | 6.6 × 10−20 | 0.25 |
Height | −0.055 | 6.6 × 10−20 | 74,992 | −0.036 | 1.8 × 10−67 | 407,823 | −0.038 (−0.042, −0.034) | 1.1 × 10−83 | 0.0029 |
Weight | −0.027 | 2.9 × 10−8 | 76,546 | −0.020 | 1.9 × 10−29 | 407,548 | −0.021 (−0.024, −0.018) | 8.9 × 10−36 | 0.18 |
RBC | −0.005 | 0.062 | 139,114 | 0.002 | 0.28 | 397,499 | 0.000 (−0.003, 0.003) | 0.85 | 0.032 |
AP alkaline phosphatase, AS ankylosing spondylitis, BPH benign prostate hyperplasia, CRP C-reactive protein, E effect, GGTP gamma-glutamyl transpeptidase, MPN myeloproliferative neoplasm, MPV mean platelet volume, n number of individuals, nAff number of cases, nCon number of controls, P P value, Phet P value for heterogeneity in the effect estimate between the Icelandic and UK Biobank data, PLT platelet count, RA rheumatoid arthritis, RBC red blood cell count, WBC white blood cell count.
The applied significance threshold was a combined P value of 1 × 10−5 (see “Methods”). Only statistically significant associations are presented.