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. 2021 Jul 5;7(7):000601. doi: 10.1099/mgen.0.000601

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© 2021 The Authors

This is an open-access article distributed under the terms of the Creative Commons Attribution NonCommercial License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.

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Fig. 2. — Bayesian analysis of 180 European CC1-MRSA-IV isolates and 10 MSSA precursors of the clone. (a) A Bayesian consensus tree based on 7330 non-recombinant core-genome SNPs and including 95 % HPD intervals across different dimensional partitioning of population sizes. (b) Posterior density distribution showing tree height (MRCA). (c) Estimated effective population size of the clone over time (dark line) including 95 % HPD intervals (grey shading) denoting uncertainty. (d) Posterior density distribution showing clock-rate estimates for the core-genome SNP alignment.