Table 2.
Relative abundance of clinical mastitis-related MPEC isolates from this study and previous studies
|
Gene |
Putative annotation |
Relative abundance in clinical mastitis-related MPEC isolates from this study (n/113) |
Relative abundance in clinical mastitis-related MPEC isolates from previous studies (n/100) |
|---|---|---|---|
|
adeQ |
Adenine permease |
Core (112/113) |
100/100 |
|
yfiE |
HTH-type transcriptional activator |
Core (113/113) |
100/100 |
|
nifJ |
Pyruvate-flavodoxin oxidoreductase |
Core (113/113) |
100/100 |
|
ygjI |
Putative inner membrane transporter |
Core (112/113) |
97/100 |
|
yhjX |
Putative MFS-type transporter |
Core (112/113) |
100/100 |
|
ygjJ* |
Putative periplasmic protein |
Core (113/113) |
100/100 |
|
pqqL* |
Zinc metallopeptidase |
Core (112/113) |
100/100 |
|
fdeC* |
Intimin-like adhesin |
Soft-core (110/113) |
95/100 |
|
Group_69† |
– |
Soft-core (108/113) |
96/100 |
*Genes that were initially annotated as hypothetical proteins. The identical genes were identified manually by blast on NCBI and UniProt.
†Pseudogene.