Fig. 6.

Complete T3SE repertoires for each of the 58 Pseudomonas strains that were whole-genome sequenced in this study. The phylogenetic tree was generated from a concatenated core-genome amino acid alignment using FastTree, with an SH-Test branch support cut-off of 50 %. The tree was rooted at the base of the P. syringae species complex and the tree scale reflects the number of stubstitutions per site. The 70 established P. syringae T3SE families that we delimited in an earlier study are listed on the left of the plot. A filled box indicates that at least one T3SE from the family is present in the strain and an empty box indicates that the T3SE is absent.