Table 1.
Summary of the Pseudomonas strains isolated and analysed in this study
Additional isolate metadata can be found in Dataset S1. PG, Phylogroup. NA, Not Available.
|
Isolate |
Species/pathovar |
PG |
Disease |
Host |
Isolation province |
Isolation year |
|---|---|---|---|---|---|---|
|
YA0001 |
viridiflava |
7 |
Pith necrosis |
Tomato |
Mersin |
2002 |
|
YA0002 |
cichorii |
11 |
Pith necrosis |
Tomato |
Mugla |
2003 |
|
YA0006 |
apii |
5 |
Bacterial leaf spot |
Parsley |
Hatay |
2012 |
|
YA0007 |
apii |
5 |
Bacterial leaf spot |
Parsley |
Mersin |
2011 |
|
YA0008 |
pisi |
2 |
Bacterial blight |
Pea |
Adana |
2016 |
|
YA0009 |
pisi |
2 |
Bacterial blight |
Pea |
Adana |
2014 |
|
YA0010 |
tomato |
1 |
Bacterial speck |
Tomato |
Adana |
2016 |
|
YA0011 |
tomato |
1 |
Bacterial speck |
Tomato |
Mersin |
2015 |
|
YA0012 |
tomato |
1 |
Bacterial speck |
Tomato |
Adana |
2015 |
|
YA0013 |
tomato |
1 |
Bacterial speck |
Tomato |
Adana |
2014 |
|
YA0014 |
tomato |
1 |
Bacterial speck |
Tomato |
Adana |
2012 |
|
YA0015 |
tomato |
1 |
Bacterial speck |
Tomato |
Adana |
2013 |
|
YA0016 |
tomato |
1 |
Bacterial speck |
Tomato |
Hatay |
1996 |
|
YA0017 |
phaseolicola |
3 |
Halo blight |
Bean |
Hatay |
2016 |
|
YA0018 |
phaseolicola |
3 |
Halo blight |
Bean |
Hatay |
2016 |
|
YA0019 |
phaseolicola |
3 |
Halo blight |
Bean |
Hatay |
2016 |
|
YA0020 |
phaseolicola |
3 |
Halo blight |
Bean |
Hatay |
2016 |
|
YA0021 |
phaseolicola |
3 |
Halo blight |
Bean |
Hatay |
2016 |
|
YA0022 |
phaseolicola |
3 |
Halo blight |
Bean |
Hatay |
2017 |
|
YA0023 |
phaseolicola |
3 |
Halo blight |
Bean |
Hatay |
2017 |
|
YA0024 |
syringae |
2 |
Bacterial blight |
Artichoke |
Adana |
2010 |
|
YA0025 |
syringae |
2 |
Bacterial blight |
Artichoke |
Adana |
2010 |
|
YA0026 |
syringae |
2 |
Leaf necrosis |
Muskmelon |
Adana |
2017 |
|
YA0027 |
syringae |
2 |
Leaf necrosis |
Muskmelon |
Adana |
2017 |
|
YA0030 |
syringae |
2 |
Citrus blast |
Mandarin orange |
Adana |
2012 |
|
YA0031 |
syringae |
2 |
Citrus blast |
Mandarin orange |
Adana |
2012 |
|
YA0032 |
syringae |
3 |
Bacterial canker |
Plum |
Hatay |
2012 |
|
YA0033 |
syringae |
3 |
Bacterial canker |
Apricot |
Hatay |
2014 |
|
YA0041 |
syringae |
2 |
Citrus blast |
Mandarin orange |
Hatay |
2014 |
|
YA0042 |
syringae |
2 |
Citrus blast |
Mandarin orange |
Hatay |
2014 |
|
YA0043 |
syringae |
2 |
Citrus blast |
Mandarin orange |
Hatay |
2014 |
|
YA0044 |
syringae |
2 |
Citrus blast |
Mandarin orange |
Hatay |
2014 |
|
YA0045 |
syringae |
2 |
Citrus blast |
Mandarin orange |
Hatay |
2014 |
|
YA0046 |
syringae |
2 |
Citrus blast |
Sweet orange |
Hatay |
2014 |
|
YA0047 |
syringae |
2 |
Citrus blast |
Mandarin orange |
Hatay |
2014 |
|
YA0048 |
syringae |
2 |
Citrus blast |
Mandarin orange |
Hatay |
2014 |
|
YA0049 |
syringae |
2 |
Citrus blast |
Mandarin orange |
Hatay |
2014 |
|
YA0050 |
syringae |
2 |
Bacterial canker |
Plum |
Hatay |
2014 |
|
YA0051 |
syringae |
2 |
Bacterial canker |
Plum |
Hatay |
2014 |
|
YA0052 |
syringae |
2 |
Bacterial canker |
Plum |
Hatay |
2014 |
|
YA0053 |
syringae |
2 |
Citrus blast |
Lemon |
Mersin |
2014 |
|
YA0054 |
syringae |
2 |
Citrus blast |
Lemon |
Mersin |
2014 |
|
YA0055 |
syringae |
2 |
Citrus blast |
Lemon |
Mersin |
2014 |
|
YA0056 |
syringae |
2 |
Citrus blast |
Lemon |
Mersin |
2014 |
|
YA0057 |
syringae |
2 |
Citrus blast |
Lemon |
Mersin |
2014 |
|
YA0058 |
syringae |
2 |
Citrus blast |
Lemon |
Mersin |
2014 |
|
YA0059 |
syringae |
2 |
Citrus blast |
Mandarin orange |
Adana |
2014 |
|
YA0060 |
syringae |
2 |
Citrus blast |
Sweet orange |
Adana |
2014 |
|
YA0061 |
syringae |
2 |
Citrus blast |
Mandarin orange |
Adana |
2014 |
|
YA0062 |
syringae |
2 |
Citrus blast |
Sweet orange |
Adana |
2014 |
|
YA0063 |
syringae |
2 |
Citrus blast |
Mandarin orange |
Adana |
2014 |
|
YA0064 |
syringae |
2 |
Citrus blast |
Sweet orange |
Hatay |
2015 |
|
YA0065 |
syringae |
2 |
Citrus blast |
Mandarin orange |
Hatay |
2015 |
|
YA0066 |
syringae |
2 |
Citrus blast |
Mandarin orange |
Hatay |
2015 |
|
YA0067 |
syringae |
2 |
Citrus blast |
Mandarin orange |
Hatay |
2015 |
|
YA0068 |
syringae |
2 |
Citrus blast |
Lemon |
Hatay |
2015 |
|
YA0069 |
syringae |
2 |
Citrus blast |
Sweet orange |
Hatay |
2015 |
|
YA0073 |
syringae |
2 |
Citrus blast |
Lemon |
Mersin |
2015 |
|
YA0074 |
syringae |
2 |
Citrus blast |
Lemon |
Mersin |
2015 |
|
YA0075 |
syringae |
2 |
Citrus blast |
Lemon |
Mersin |
2015 |
|
YA0076 |
syringae |
2 |
Citrus blast |
Lemon |
Mersin |
2015 |
|
YA0077 |
syringae |
2 |
Citrus blast |
Lemon |
Mersin |
2015 |
|
YA0078 |
syringae |
2 |
Citrus blast |
Lemon |
Mersin |
2015 |
|
YA0079 |
syringae |
2 |
Bacterial canker |
Plum |
Adana |
2015 |
|
YA0080 |
syringae |
2 |
Citrus blast |
Sweet orange |
Adana |
2015 |
|
YA0081 |
syringae |
2 |
Citrus blast |
Sweet orange |
Adana |
2015 |
|
YA0082 |
syringae |
2 |
Citrus blast |
Sweet orange |
Adana |
2015 |
|
YA0083 |
syringae |
2 |
Citrus blast |
Sweet orange |
Adana |
2015 |
|
YA0084 |
syringae |
2 |
Citrus blast |
Mandarin orange |
Adana |
2015 |
|
YA0086 |
syringae |
3 |
Bacterial canker |
Plum |
Hatay |
2012 |
|
YA0087 |
viridiflava |
7 |
Pith necrosis |
Tomato |
Mersin |
2002 |
|
YA0088 |
viridiflava |
7 |
Leaf blight |
Muskmelon |
Adana |
2002 |
|
YA0089 |
viridiflava |
7 |
Leaf blight |
Muskmelon |
Adana |
2003 |
|
YA0092 |
tomato |
1 |
na |
na |
na |
2014 |
|
YA0093 |
tomato |
1 |
Bacterial speck |
Tomato |
Adana |
2017 |
|
YA0094 |
tomato |
1 |
Bacterial speck |
Tomato |
Mersin |
2016 |
|
YA0186 |
cichorii |
11 |
na |
Lettuce |
na |
1990 |
|
YA0187 |
viridiflava |
7 |
na |
Bean |
na |
1988 |
|
YA0247 |
savastanoi |
3 |
Knot disease |
Oleander |
Adana |
2017 |
|
YA0265 |
savastanoi |
3 |
Knot disease |
Oleander |
Mersin |
2017 |
|
YA0278 |
savastanoi |
3 |
Knot disease |
Oleander |
Mersin |
2017 |
|
YA0289 |
savastanoi |
3 |
Knot disease |
Oleander |
Adana |
2017 |
|
YA0300 |
savastanoi |
3 |
Knot disease |
Oleander |
Mersin |
2017 |
|
YA0301 |
savastanoi |
3 |
Knot disease |
Oleander |
Adana |
2017 |
|
YA0306 |
savastanoi |
3 |
Knot disease |
Oleander |
Adana |
2017 |
|
YA0329 |
savastanoi |
3 |
Knot disease |
Oleander |
Mersin |
2017 |
|
YA0344 |
savastanoi |
3 |
Knot disease |
Oleander |
Mersin |
2017 |
|
YA0348 |
savastanoi |
3 |
Knot disease |
Oleander |
Adana |
2017 |
|
YA0359 |
savastanoi |
3 |
Knot disease |
Oleander |
Adana |
2017 |
|
YA0365 |
savastanoi |
3 |
Knot disease |
Oleander |
Mersin |
2017 |
|
YA0372 |
savastanoi |
3 |
Knot disease |
Oleander |
Mersin |
2017 |
|
YA0385 |
savastanoi |
3 |
Knot disease |
Oleander |
Osmaniye |
2017 |
|
YA0409 |
savastanoi |
3 |
Knot disease |
Olive |
Mersin |
2017 |
|
YA0423 |
savastanoi |
3 |
Knot disease |
Oleander |
Mersin |
2017 |
|
YA0450 |
savastanoi |
3 |
Knot disease |
Olive |
Hatay |
2017 |
|
YA0473 |
savastanoi |
3 |
Knot disease |
Fontanesia |
Adana |
2017 |
|
YA0479 |
savastanoi |
3 |
Knot disease |
Myrtle |
Adana |
2017 |
|
YA0513 |
savastanoi |
3 |
Knot disease |
Oleander |
Adana |
2017 |
|
YA0518 |
savastanoi |
3 |
Knot disease |
Myrtle |
Adana |
2017 |
|
YA0533 |
savastanoi |
3 |
Knot disease |
Oleander |
Hatay |
2017 |
|
YA0541 |
savastanoi |
3 |
Knot disease |
Oleander |
Mersin |
2017 |
|
YA0556 |
savastanoi |
3 |
Knot disease |
Olive |
Canakkale |
2008 |
|
YA0557 |
savastanoi |
3 |
Knot disease |
Pomegranate |
Hatay |
2014 |
|
YA0559 |
savastanoi |
3 |
Knot disease |
Oleander |
Tekirdag |
2017 |
|
YA0560 |
savastanoi |
3 |
Knot disease |
Oleander |
Tekirdag |
2017 |
|
YA0561 |
savastanoi |
3 |
Knot disease |
Oleander |
Tekirdag |
2017 |
|
YA0574 |
tomato |
1 |
Bacterial speck |
Tomato |
Adana |
2014 |
|
YA0575 |
tomato |
1 |
Bacterial speck |
Tomato |
Adana |
2014 |
|
YA0576 |
tomato |
1 |
Bacterial speck |
Tomato |
Adana |
2014 |
|
YA0577 |
tomato |
1 |
Bacterial speck |
Tomato |
Adana |
2014 |
|
YA0578 |
tomato |
1 |
Bacterial speck |
Tomato |
Adana |
2014 |
|
YA0579 |
tomato |
1 |
Bacterial speck |
Tomato |
Adana |
2014 |
|
YA0580 |
tomato |
1 |
Bacterial speck |
Tomato |
Adana |
2014 |
|
YA0581 |
tomato |
1 |
Bacterial speck |
Tomato |
Adana |
2014 |
|
YA0582 |
tomato |
1 |
Bacterial speck |
Tomato |
Adana |
2014 |
|
YA0583 |
tomato |
1 |
Bacterial speck |
Tomato |
Adana |
2014 |
|
YA0584 |
tomato |
1 |
Bacterial speck |
Tomato |
Mersin |
2015 |
|
YA0585 |
tomato |
1 |
Bacterial speck |
Tomato |
Mersin |
2015 |
|
YA0586 |
tomato |
1 |
Bacterial speck |
Tomato |
Mersin |
2015 |
|
YA0587 |
tomato |
1 |
Bacterial speck |
Tomato |
Mersin |
2015 |
|
YA0588 |
tomato |
1 |
Bacterial speck |
Tomato |
Mersin |
2015 |
|
YA0589 |
tomato |
1 |
Bacterial speck |
Tomato |
Mersin |
2015 |
|
YA0590 |
tomato |
1 |
Bacterial speck |
Tomato |
Mersin |
2015 |
|
YA0591 |
tomato |
1 |
Bacterial speck |
Tomato |
Mersin |
2016 |
|
YA0592 |
tomato |
1 |
Bacterial speck |
Tomato |
Mersin |
2016 |
|
YA0593 |
tomato |
1 |
Bacterial speck |
Tomato |
Mersin |
2016 |
|
YA0595 |
tomato |
1 |
Bacterial speck |
Tomato |
Mersin |
2016 |
|
YA0596 |
tomato |
1 |
Bacterial speck |
Tomato |
Adana |
2016 |
|
YA0597 |
tomato |
1 |
Bacterial speck |
Tomato |
Adana |
2016 |
|
YA0598 |
tomato |
1 |
Bacterial speck |
Tomato |
Adana |
2016 |
|
YA0599 |
tomato |
2 |
Bacterial speck |
Tomato |
Adana |
2016 |
|
YA0600 |
tomato |
1 |
Bacterial speck |
Tomato |
Adana |
2016 |
|
YA0601 |
tomato |
1 |
Bacterial speck |
Tomato |
Adana |
na |
|
YA0602 |
tomato |
1 |
Bacterial speck |
Tomato |
Antalya |
2017 |
|
YA0637 |
tomato |
2 |
Bacterial speck |
Tomato |
Adana |
2017 |
|
YA0649 |
viridiflava |
7 |
Pith necrosis |
Bean |
na |
1994 |
|
YA0692 |
syringae |
3 |
Bacterial canker |
Apricot |
Hatay |
2014 |
|
YA0693 |
syringae |
3 |
Bacterial canker |
Apricot |
Hatay |
2014 |
|
YA0694 |
syringae |
3 |
Bacterial canker |
Plum |
Hatay |
2012 |
|
YA0695 |
cichorii |
11 |
Pith necrosis |
Tomato |
Antalya |
2003 |
|
YA0697 |
viridiflava |
7 |
Pith necrosis |
Tomato |
Hatay |
2002 |
|
YA0698 |
viridiflava |
7 |
Leaf blight |
Muskmelon |
Adana |
2002 |
|
YA0699 |
viridiflava |
7 |
Leaf blight |
Muskmelon |
Adana |
2002 |
|
YA0700 |
viridiflava |
7 |
Leaf blight |
Muskmelon |
Adana |
2002 |
|
YA0701 |
viridiflava |
7 |
Leaf blight |
Muskmelon |
Adana |
2002 |
|
YA0719 |
fluorescens |
Pfl |
Pith necrosis |
Tomato |
Mersin |
2018 |
|
YA0720 |
fluorescens |
Pfl |
Pith necrosis |
Tomato |
Mersin |
2018 |
|
YA0721 |
fluorescens |
Pfl |
Pith necrosis |
Tomato |
Mersin |
2018 |
|
YA0729 |
fluorescens |
Pfl |
Pith necrosis |
Tomato |
Mersin |
2018 |
|
YA0743 |
atrofaciens |
2 |
Wheat rot |
Wheat |
na |
1994 |
|
YA0745 |
fluorescens |
Pfl |
Pith necrosis |
Tomato |
na |
1994 |
|
YA0748 |
savastanoi |
3 |
Knot disease |
Fontanesia |
Adana |
2014 |
|
YA0750 |
savastanoi |
3 |
Knot disease |
Olive |
Hatay |
2014 |
|
YA0751 |
savastanoi |
3 |
Knot disease |
Oleander |
Adana |
2014 |
|
YA0752 |
savastanoi |
3 |
Knot disease |
Oleander |
Adana |
2015 |
|
YA0753 |
savastanoi |
3 |
Knot disease |
Oleander |
Adana |
2016 |
|
YA0757 |
viridiflava |
7 |
Pith necrosis |
Tomato |
Antalya |
2003 |
|
YA0758 |
viridiflava |
7 |
Pith necrosis |
Tomato |
Antalya |
2003 |
|
YA0759 |
viridiflava |
7 |
Pith necrosis |
Tomato |
Antalya |
2003 |
|
YA0783 |
corrugata |
Pfl |
Pith necrosis |
Tomato |
Mersin |
2018 |
|
YA0788 |
corrugata |
Pfl |
Pith necrosis |
Tomato |
Mersin |
2018 |
|
YA0796 |
syringae |
2 |
Bacterial blight |
Artichoke |
Adana |
2010 |
|
YA0797 |
syringae |
2 |
Bacterial blight |
Artichoke |
Adana |
2010 |
|
YA0831 |
cichorii |
11 |
Varnish spot |
Lettuce |
na |
1994 |
|
YA0848 |
fluorescens |
Pfl |
Pith necrosis |
Tomato |
Mersin |
2018 |
|
YA0849 |
fluorescens |
Pfl |
Pith necrosis |
Tomato |
Mersin |
2018 |
|
YA0850 |
fluorescens |
Pfl |
Pith necrosis |
Tomato |
Mersin |
2018 |
|
YA0851 |
fluorescens |
Pfl |
Pith necrosis |
Tomato |
Mersin |
2018 |
|
YA0852 |
fluorescens |
Pfl |
Pith necrosis |
Tomato |
Mersin |
2018 |
|
YA0853 |
fluorescens |
Pfl |
Pith necrosis |
Tomato |
Mersin |
2018 |
|
YA0867 |
syringae |
2 |
Seedling blight |
Watermelon |
Adana |
2018 |
|
YA0868 |
syringae |
2 |
Seedling blight |
Watermelon |
Adana |
2018 |
|
YA0869 |
syringae |
2 |
Seedling blight |
Watermelon |
Adana |
2018 |
|
YA0870 |
syringae |
2 |
Seedling blight |
Watermelon |
Adana |
2018 |
|
YA0871 |
fluorescens |
Pfl |
na |
Lettuce |
Adana |
2018 |