TABLE 1.
Summary of the differentially expressed genes in ΔtroR compared to the WT strain
| GeneID | Read count for: |
Log2 fold change | Padj | Description | |
|---|---|---|---|---|---|
| ΔtroR mutant | WT | ||||
| SSUSC84_RS08475 | 172.496259 | 1,692.640537 | −3.2946 | 4.98E−05 | Enoyl-[acyl-carrier-protein] reductase FabK |
| SSUSC84_RS08465 | 79.42321497 | 776.5504876 | −3.2894 | 0.032699 | 3-Oxoacyl-[acyl-carrier-protein] reductase |
| SSUSC84_RS08495 | 874.0360026 | 2,634.921548 | −1.592 | 1.92E−07 | Enoyl-CoA hydratase |
| SSUSC84_RS07585 | 3,695.542083 | 6,997.785595 | −0.92111 | 0.032699 | Hypothetical protein |
| SSUSC84_RS01215 | 215.337514 | 106.7483999 | 1.0124 | 0.047586 | α,α-Phosphotrehalase |
| SSUSC84_RS05475 | 181.1103214 | 85.95622599 | 1.0752 | 0.038677 | β-Hexosamidase |
| SSUSC84_RS06535 | 1,163.244077 | 508.8348814 | 1.1929 | 0.00072886 | CopA |
| SSUSC84_RS05645 | 319.8083029 | 135.5352753 | 1.2385 | 0.0019577 | Membrane protein |
| SSUSC84_RS05470 | 235.5409301 | 99.05513486 | 1.2497 | 0.0037403 | Glycoside hydrolase family 3 protein |
| SSUSC84_RS07610 | 1,581.638773 | 626.7822994 | 1.3354 | 9.38E−05 | GtrA family protein |
| SSUSC84_RS04025 | 197.6334627 | 72.90937538 | 1.4387 | 0.00033251 | 4-Oxalocrotonate tautomerase |
| SSUSC84_RS01570 | 307.5378467 | 83.89864933 | 1.874 | 0.016174 | PmtA |
| SSUSC84_RS09765 | 88,487.52168 | 8,676.327877 | 3.3503 | 6.53E−32 | PepO |
| SSUSC84_RS09790 | 33,734.07384 | 2,622.592268 | 3.6851 | 4.54E−37 | TroA |
| SSUSC84_RS09785 | 8,337.89467 | 433.2156108 | 4.2665 | 1.34E−46 | Hypothetical protein |
| SSUSC84_RS10665 | 177.4460472 | 7.880123374 | 4.493 | 4.36E−25 | Hypothetical protein |
| SSUSC84_RS09780 | 30,303.83419 | 1,307.754198 | 4.5343 | 3.60E−52 | TroB |
| SSUSC84_RS09775 | 15,491.15677 | 554.916931 | 4.803 | 9.41E−57 | TroC |
| SSUSC84_RS09770 | 16,903.09614 | 562.798094 | 4.9085 | 9.68E−59 | TroD |
| SSUSC84_RS09305 | 46,886.28412 | 256.1670182 | 7.5159 | 9.56E−08 | Serine protease |