TABLE 5.

SSRs identified from in silico comparative analysis of the chloroplast genomes of eight haplotypes.

Region	Position	Location	Forward sequence	Reverse sequence	SSR type	Product size
LSC	matK-trnK(UUU)	Spacer	CCG​AAT​CGC​TCT​TTT​GAT​TTC	CCC​GAT​CTA​ACT​AGA​CGT​T	(A)11	175
LSC	trnK(UUU)-rps16	Spacer	AAGGATGTATAGATACAA	ATA​TTG​ACA​ACA​GTG​TAT​TG	(A)13	162
LSC	rps16	Intron	GAT​CAT​AAA​AGC​CCA​CCC​TT	TGGGCCCATTTGTCATTT	(C)10	206
LSC	psbK-psbI	Spacer	CTA​TAG​GGT​CTC​CCA​CAA​TA	ACT​ACG​GTA​TAA​ACG​AAG​AG	(T)10	199
LSC	psbI-trnS(GCU)	Spacer	GGC​GAA​ATC​CTG​GAC​GTG​AAG​AA	AAT​TGG​GAG​AGA​TGG​CTG​AGT​GGA	(A)10	220
LSC	trnG(UCC)-trnR(UCU)	Spacer	TTC​GAT​TCC​CGC​TAC​CCG​CTT​ATT	CGT​CCA​ATA​GGA​TTT​GAA​CCT​ATA​C	(T)10	242
LSC	atpF	Intron	CGA​TTC​ATT​TGG​CTC​TCG​CGC​TC	CTC​GAT​ATA​GAA​CAC​TCA​TCT​C	(T)10	296
LSC	atpF	Intron	ATT​TGG​CTC​TCG​CGC​TCA​A	GTC​AGA​AGA​GTC​CTC​TAA​GTA	(A)11	122
LSC	atpF	Intron	GAA​TGT​AAT​GAG​CCT​ATC​CTC​TTC	GGC​ATA​GGT​CGT​CGA​TTC​ATC​ATT​G	(A)10	170
LSC	atpF-atpH	Spacer	AAC​TCC​CGG​CAG​ATG​GCC​AGT​GGC​CCA​A	CCT​ACG​GGA​AAG​GCT​GAT​TCG​C	(T)14	285
LSC	petN-psbM	Spacer	GAA​TTT​GGA​ATC​TCA​TTG​G	GGT​CCG​TCT​TCC​TCA​GTA​TCC​ATC	(TTGTA)3	217
LSC	ycf3	Intron	CCA​GAA​CCT​CTA​GGT​GTA​ACC	TGC​TGG​CTA​TGC​CTA​GAT​CGC​GAA	(A)11	329
LSC	trnF(GAA)-ndhJ	Spacer	GGC​ACA​TGG​TTA​AAT​TGG​ATG​AGG	GTA​TCT​GAG​CCG​AAT​CTT​G	(TAAA)3	301
LSC	ndhC-trnV(UAC)	Spacer	CAC​CTA​GGA​TTC​TTG​CTA​AAG	CCT​AGC​CAA​GCA​CAC​CAA​AAC	(T)11	317
LSC	petA-psbJ	Spacer	CGGGTTTCCAGGTGTATC	CAC​CTC​TTC​CTC​GAT​CTT​G	(AT)5	268
LSC	rpl33-rps18	Spacer	GTA​TGT​CTT​ATC​CTT​GAA​AGG​GG	CGC​CTA​CGA​AAA​GAT​CGC​TTG​G	(A)12	170
LSC	clpP	Intron	CGC​TGA​ACT​GGA​CTT​CCG​A	ATT​CCC​TCA​CGC​TTG​GCG​CCA	(A)10	205
LSC	petB	intron	GGT​AGT​ATC​ACC​ACA​AAG​AAG​AG	TGA​GAT​AGG​CGA​AAA​CCC​CC	(T)16	193
LSC	rpl14-rps3	spacer	GCA​ATT​AAT​TTG​AAT​AGA​TAT​T	GAG​AAA​TGA​CGA​ACA​GGT​GCT	(A)10	180
SSC	ndhF	exon	AGC​CCA​CAT​ACG​ATG​AAG​AT	ATT​TGA​AGT​ATT​TAG​CAG​A	(A)11	281
SSC	rpl32-trnL(UAG)	spacer	TTA​TCA​TTT​GCA​AGG​CGG​G	CTCTTGTAAATCCTAC	(T)11	336
SSC	rps15-ycf1	Spacer	CAGATATGGATTTTACCG	TTC​GAT​CTC​GAA​ATG​AAT​CAC​C	(AATC)3	207