TABLE 1.
fimA type-specific or 16S rRNA-specific primers used in this study
Primer set | Sequence (5′ to 3′) | Size (bp)a |
---|---|---|
Universal primers for positive control | AGA GTT TGA TCC TGG CTC AG | 3,480 |
GGC TAC CTT GTT ACG ACT T | ||
P. gingivalis 16S rRNA | TGT AGA TGA CTG ATG GTG AAA ACC | 197 |
ACG TCA TCC CCA CCT TCC TC | ||
Type I fimA | CTG TGT GTT TAT GGC AAA CTT C | 392 |
AAC CCC GCT CCC TGT ATT CCG A | ||
Type II fimA | ACA ACT ATA CTT ATG ACA ATG G | 257 |
AAC CCC GCT CCC TGT ATT CCG A | ||
Type III fimA | ATT ACA CCT ACA CAG GTG AGG C | 247 |
AAC CCC GCT CCC TGT ATT CCG A | ||
Type IV fimA | CTA TTC AGG TGC TAT TAC CCA A | 251 |
AAC CCC GCT CCC TGT ATT CCG A |
Expected size of PCR product.