REAGENT or RESOURCE	SOURCE	IDENTIFIER
Antibodies
Anti-mouse Iba1 (rabbit)	WAKO	Cat# 019-19,741; RRID: AB_839504
Anti-rabbit AF594 (goat)	Thermo Fisher Scientific	Cat# A32740; RRID: AB_2762824
Chemicals, peptides, and recombinant proteins
DAPI (4′,6-Diamidino-2-Phenylindole)	Thermo Fisher Scientific	D1306; RRID: AB_2629482
Fluoromount aqueous mounting medium	Merck	F4680
Critical commercial assays
Slice golgi Kit	Bioenno Lifesciences	003760
Deposited data
Raw and analyzed data	This paper	https://dx.doi.org/10.17617/3.5p
Experimental models: organisms/strains
Mouse: C57BL6/J	Charles River	000,664
Software and algorithms
MATLAB_R2019b	The MathWorks, Inc
Microsoft Excel	Microsoft Corporation
GraphPad Prism 8/9	Graphpad SoftwareInc
AIDAmri_v1.1	Own development	https://github.com/aswendtlab/AIDAmri
AIDAconnect_v1.0	Own development	https://github.com/aswendtlab/AIDAconnect
FSL 5.0.1		https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/
ITK-SNAP 3.8.0		http://www.itksnap.org/pmwiki/pmwiki.php
Brain connectivity Toolbox		https://sites.google.com/site/bctnet/
Python 3.6		https://www.python.org/downloads/release/python-360/
ImageJ 2.1.0		https://imagej.net/
Fiji 2.0		https://imagej.net/software/fiji/
Imaris x64 version 8.4.0	BITPLANE
ParaVision (PV) version 6.0.1 and 7.0	Bruker Biospin