Antibodies |
|
Anti-CD45 |
BD |
558411 |
Anti-CD3 |
BD |
560770 |
Anti-CD16 |
Beckman |
A33098 |
Anti-NKG2A |
Beckman |
PNA60797 |
Anti-CD20 |
BD |
555624 |
Anti-Granzyme B |
BD |
561151 |
Anti-CXCR5 |
MABTech |
11-9185-42 |
Anti-PD-1 |
Biolegend |
329922 |
Anti-CD4 |
BD |
560811 |
Anti-MHC-E |
Biolegend |
342603 |
Anti-HLA-DR |
OZYME |
307626 |
Anti-IFNg |
BD |
554702 |
Anti-IL-10 |
Biolegend |
501420 |
Anti-IL6 |
BD |
559331 |
Anti-CD8 |
Miltenyi |
BW135/80 |
Anti-CD3 |
BD |
560770 |
Anti-CD20 |
BD |
560631 |
Anti-IgD |
Southern Biotech |
2030-07 |
Anti-CD27 |
BD |
560609 |
Anti-CD107a |
BD |
555802 |
Anti-IgG |
BD |
555786 |
Anti-IgM |
BD |
562031 |
Anti-Ki67 |
BD |
556027 |
Anti-CD14 |
BD |
557154 |
Anti-PE microbeads |
Miltenyi |
130-048-801 |
Anti-CD20 microbeads |
Miltenyi |
130-091-105 |
|
Critical commercial assays |
|
Human NK cell isolation kit |
Stemcell |
17955 |
RNeasy Mini Kit |
Qiagen |
205113 |
High-Sensitivity DNA Assay Kit |
Invitrogen |
Q33120 |
|
Recombinant proteins |
|
Human IL-2 |
Miltenyi |
130-097-746 |
Human IL-4 |
Miltenyi |
130-093-917 |
Human IL-15 |
Miltenyi |
130-095-760 |
Human IL-6 |
Miltenyi |
130-093-931 |
Human GM-CSF |
Miltenyi |
130-093-862 |
|
Experimental models: organisms/strains |
|
Wild-type SIVagm.sab92018 |
Diop OM et al., J. Virol., 2000 (https://10.1128/jvi.74.16.7538-7547.2000) |
N/A |
SIVmac251 isolate |
Huot et al. Nat. Med. 2017 (https://doi.org/10.1038/nm.4421) |
N/A |
|
Oligonucleotides |
|
Primers for IL-6, see STAR Methods
|
ACD |
https://acdbio.com |
|
Deposited data |
|
RNA sequencing raw data |
This paper and Huot et al. Nat. Med. 2021 (https://doi.org/10.1038/s41467-021-21402-1) |
GSE140600 |
|
Software and algorithms |
|
Fiji (ImageJ) |
Open Source |
https://imagej.net/software/fiji/ |
Prism |
GraphPad |
https://www.graphpad.com |
CLC Sequence Viewer 7 |
Open Source |
https://clc-sequence-viewer.software.informer.com |
BD FACSDiva |
BD |
https://www.bdbiosciences.com |
FlowJo |
BD |
https://www.flowjo.com |
|
Other |
|
Monkey IL6 genome references (ENSMFAG00000000229, ENSCSAG00000013925) |
Ensembl |
https://www.ensembl.org |
Monkey IL6R genome references (ENSCSAG00000001948, ENSMFAT00000012800, ENSMFAT00000012809, ENSMFAT00000012806, ENST00000344086, ENST00000368485, ENST00000476006, ENST00000512471, ENST00000622330) |
Ensembl |
https://www.ensembl.org |