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. 2021 Sep 11;24(10):103118. doi: 10.1016/j.isci.2021.103118
REAGENT or RESOURCE SOURCE IDENTIFIER
Bacterial and Virus Strains

One Shot TOP10 Chemically Competent E. coli Invitrogen C404006

Chemicals, Peptides and Recombinant Proteins

Tricaine (MS-222) Syndel Tricaine-S
SU5402 Selleckchem S7667
Nicotinamide (NAM) Sigma N0636
Sirtinol Sigma 566321
FK-866 Cayman Chemical 13287
Doxycycline Sigma D9891
Cas9 protein PNA Bio CP01-200
T7 nuclease New England Biolabs M0302L
Pfusion Taq polymerase New England Biolabs M0535L

Critical Commercial Assays

mMESSAGE mMACHINE Invitrogen AM1340
MEGAshortscript Kit ThermoFisher SCIENTIFIC AM1354
RNeasy Mini Kit QIAGEN 74104
Superscript VILO cDNA Synthesis Kit Invitrogen 11754050
LightCycler 480 SYBR Green master mix Roche 04-887-352-001
TruSeq RNA Library Prep Kit v2 Illumina RS-122-2001
Gateway LR Clonase II Enzyme mix ThermoFisher SCIENTIFIC 11791020
Trizol Reagent ThermoFisher SCIENTIFIC 15596018

Deposited Data

Raw and analyzed data This paper GEO:GSE182113

Experimental Models: Organisms/Strains

Zebrafish hspd1 mutant strain (nbl) ZIRC ZL737
Zebrafish strain sirt1wcm18/wcm18 This paper sirt1wcm18/wcm18
Zebrafish strain sirt1wcm19/wcm19 This paper sirt1wcm19/wcm19
Zebrafish strain Tg(hspd1:d2-gfp)wcm20 This paper Tg(hspd1:d2-gfp)wcm20

Oligonucleotides

PCR primer sequences IDT See Table S1
sirt1 mutant genotyping primers IDT See Table S1
hspd1 promoter cloning primers IDT See Table S1
Mouse ODC D2 fragment cloning primers IDT See Table S1
sirt1 gRNA for CRISPR-Cas9 mutagenesis IDT See Table S1

Recombinant DNA

pCR4Blunt-TOPO ThermoFisher SCIENTIFIC K287520
pDestTol2pA2 Addgene http://tol2kit.genetics.utah.edu
p5E-MCS Addgene http://tol2kit.genetics.utah.edu
pCS2FA-transposase Addgene http://tol2kit.genetics.utah.edu
pME-EGFP Addgene http://tol2kit.genetics.utah.edu

Software and Algorithms

ImageJ NIH https://imagej.nih.gov/ij/
R Cran https://www.R-project.org/
Star V2.3 rna-star http://code.google.com/p/rna-star/
DESeq2 Bioconductor https://doi.org/10.18129/B9.bioc.DESeq2
Prism7 Graphpad https://www.graphpad.com/scientific-software/prism/
GSEA UC-SanDiego, Broad Institute https://www.gsea-msigdb.org/gsea/