Table 2. Summary:
Insertion and deletion events are compared according to structural variant size and number and overlaps with the haplotyped assembly used in their performed evaluation. Truvari classification for the overlapping calls are shown as well as TP and FP found in the haplotyped assembly.
| SVType | Insertions | Deletions | ||
|---|---|---|---|---|
| SVLen | <50 | >=50 | <50 | >=50 |
| Number of insertion/deletion calls by cuteSV | 20007 | 14942 | 38331 | 10926 |
| Number of these calls that overlap assembly contigs | 16054 | 12075 | 30494 | 4074 |
| Number of truvari
TP/FP/no-call (NP) |
3351 FP
7200 TP 15974 NP |
368 FP
4348 TP 7359 NP |
1842 FP
18 TP 28634 NP |
117 FP
1137 TP 2820 NP |
| Number of assembly calls
TP/FP/no-call (NP) |
5220 FP
10834 TP |
8979 FP
8502 TP |
23202 FP
7292 TP |
3444 FP
3031 TP |