Table 11.

The location of the most significantly dimorphic SNPs, limited to the top 5, which were associated with the skeletal traits in the SI

							Male		Female
Trait1	Chr	Start	End	No. of dimorphic SNPs	Most significantly dimorphic SNP	Updated position of most significantly dimorphic SNP (ARS-UCD 1.2)	Allele frequency	Allele effect (SE)	Allele frequency	Allele effect (SE)	Significance of dimorphism
WH	10	39,416,014	40,523,072	17	39,916,014b	39,827,207	0.003	−0.86 (0.32)	0.004	1.05 (0.29)	8.11 × 10−6
	15	79,224,399	80,224,427	2	79,724,399d	78,498,073	0.031	−0.23 (0.09)	0.016	0.55 (0.15)	9.47 × 10−6
	21	43,816,205	44,823,203	2	44,316,205a	43,898,184	0.005	−0.82 (0.25)	0.005	0.94 (0.27)	1.70 × 10−6
	23	29,940,021	31,111,779	72	30,451,606a	30,700,499	0.314	−0.14 (0.04)	0.319	0.13 (0.04)	9.09 × 10−7
	X	144,910,600	145,867,274	8	145,410,600b	134,272,382	0.007	−0.26 (0.19)	0.011	0.30 (0.22)	3.54 × 10−8
BL	1	68,029,603	69,086,059	16	68,580,516bd	67,982,646	0.476	0.11 (0.04)	0.483	−0.15 (0.04)	7.57 × 10−7
	6	12,731,620	13,787,338	4	13,287,338a	*	0.004	1.11 (0.26)	0.009	−0.44 (0.18)	1.01 × 10−6
	9	84,630,969	85,633,807	2	85,130,969b	84,014,933	0.025	−0.52 (0.12)	0.018	0.40 (0.14)	6.71 × 10−7
	26	23,562,542	24,623,399	7	24,110,489a	23,866,480	0.086	−0.20 (0.06)	0.059	0.30 (0.08)	6.31 × 10−7
	28	39,092,226	40,119,176	5	39,592,226a	39,277,437	0.348	−0.20 (0.04)	0.347	0.08 (0.04)	5.94 × 10−7
HW	7	2,278,460	3,359,162	15	27,85,141a	2,871,594	0.109	0.16 (0.05)	0.071	−0.35 (0.08)	2.81 × 10−7
	7	92,446,667	93,472,476	2	92,972,476a	90,587,933	0.029	−0.25 (0.10)	0.020	0.67 (0.15)	1.94 × 10−7
	8	23,629,760	24,686,981	6	24,129,760c	24,165,949	0.004	−0.84 (0.27)	0.003	1.66 (0.39)	1.51 × 10−7
	21	3,783,435	4,810,305	6	4,308,308a	4,167,947	0.129	−0.23 (0.05)	0.125	0.17 (0.06)	5.70 × 10−7
	X	138,125,669	139,135,827	3	138,625,669a	138,267,978	0.067	0.02 (0.06)	0.060	0.29 (0.10)	5.57 × 10−7
CW	2	116,794,370	119,288,912	3	117,931,744	*	0.009	0.31 (0.18)	0.005	−1.24 (0.26)	5.88 × 10−7
	6	35,397,549	36,711,379	11	36,185,495b	34,752,887	0.439	0.14 (0.03)	0.472	−0.13 (0.04)	2.20 × 10−7
	12	53,187,285	54,432,359	5	53,687,285a	53,340,630	0.208	0.07 (0.04)	0.228	−0.21 (0.05)	3.91 × 10−6
	16	57,116,725	58,168,280	26	57,657,852b	56,195,234	0.007	−0.82 (0.19)	0.011	0.43 (0.18)	1.85 × 10−6
	22	23,885,582	25,123,955	9	24,451,172a	24,349,773	0.086	0.18 (0.06)	0.121	−0.21 (0.06)	2.41 × 10−6
CD	1	80,65,635	9,123,471	237	88,582,433a	87,956,643	0.004	0.08 (0.24)	0.002	−2.64 (0.42)	1.98 × 10−8
	6	117,081,578	119,074,538	2	117,581,578a	112,778,288	0.008	0.54 (0.17)	0.003	−1.47 (0.34)	1.95 × 10−7
	7	90,595,916	91,626,272	3	91,121,080a	88,762,617	0.004	0.54 (0.25)	0.002	−2.06 (0.42)	1.27 × 10−7
	11	56,218,949	59,206,326	7	58,002,539a	58,081,253	0.002	0.36 (0.38)	0.002	−3.48 (0.60)	6.15 × 10−8
	12	5,835,154	6,893,124	2	63,35,154a	6,351,298	0.004	−0.07 (0.24)	0.002	−3.48 (0.60)	1.12 × 10−7

¹WH, wither height; BL, back length; HW, hip width; CW, chest width; CD, chest depth.

^aIntergenic variant.

^bIntron variant.

^cDownstream gene variant.

^dUpstream gene variant.

*SNP has not been mapped on the latest build.