Table 3.

The location of the most significantly dimorphic SNPs, limited to the top 5, which were associated with the skeletal traits in the AA

							Male		Female
Trait1	Chr	Start	End	No. of dimorphic SNPs	Location of most significantly dimorphic SNP (UMD 3.1)	Updated position of most significantly dimorphic SNP (ARS-UCD 1.2)	Allele frequency	Allele effect (SE)	Allele frequency	Allele effect (SE)	Significance of dimorphism
WH	5	110,840,144	111,861,436	4	111,346,952b	110,829,906	0.010	−0.25 (0.17)	0.006	1.63 (0.33)	4.3 × 10−7
	8	60,455,638	62,004,178	27	61,312,774a	60,912,522	0.084	−0.20 (0.06)	0.014	1.07 (0.24)	2.45 × 10−7
	10	31,872,810	32,902,266	7	32,402,196b	32,316,973	0.091	−0.12 (0.06)	0.036	0.61 (0.14)	7.23 × 10−7
	18	6,104,766	71,13,421	4	6,613,421a	6,584,541	0.276	0.09 (0.04)	0.01	−0.32 (0.07)	8.69 × 10−7
	29	48,236,260	49,251,635	2	48,751,635a	48,087,103	0.011	−0.21 (0.16)	0.006	1.63 (0.33)	4.25 × 10−7
BL	1	70,204,850	71,422,791	16	70,835,180b	70,223,171	0.259	0.11 (0.04)	0.224	−0.30 (0.07)	2.45 × 10−7
	2	28,943,486	30,056,216	3	29,556,216a	29,476,541	0.009	0.68 (0.18)	0.026	−0.46 (0.17)	3.28 × 10−6
	6	26,975,924	27,975,924	1	27,475,924b	26,065,467	0.067	−0.11 (0.07)	0.033	0.70 (0.15)	1.19 × 10−6
	8	65,886,591	67,412,672	3	66,912,672a	66,423,762	0.019	−0.35 (0.13)	0.006	1.46 (0.36)	2.12 × 10−6
	23	23,943,976	24,943,976	1	24,443,976b	24,699,576	0.008	−0.30 (0.18)	0.006	1.60 (0.35)	1.30 × 10−6
HW	1	62,250,123	63,302,205	6	62,787,935a	62,183,938	0.023	−0.10 (0.10)	0.009	1.58 (0.30)	9.27 × 10−8
	8	57,066,889	67,412,672	77	66,296,263a	65,817,557	0.025	−0.23 (0.10)	0.005	2.29 (0.40)	9.86 × 10−10
	10	81,021,198	83,021,473	3	81,521,198c	81,172,739	0.011	−0.25 (0.14)	0.003	2.84 (0.55)	5.48 × 10−8
	11	30,092,116	31,173,851	16	30,670,702d	30,824,114	0.022	−0.20 (0.12)	0.003	2.84 (0.55)	6.34 × 10−8
	13	6,530,211	7,544,606	3	7,030,211b	6,887,666	0.007	−0.46 (0.19)	0.003	2.87 (0.56)	1.72 × 10−8
CW	2	12,527,638	14,665,457	29	16,317,185a	16,287,817	0.008	0.48 (0.18)	0.003	−2.24 (0.52)	6.46 × 10−7
	6	42,435,811	43,438,281	2	42,938,281b	41,487,714	0.497	−0.05 (0.03)	0.424	0.27 (0.06)	9.43 × 10−7
	6	46,088,094	47,172,011	47	46,597,538a	45,051,418	0.200	−0.10 (0.04)	0.140	0.32 (0.08)	1.08 × 10−6
	15	74,696,711	75,749,423	10	75,205,777b	74,292,869	0.085	−0.07 (0.06)	0.034	0.75 (0.15)	2.27 × 10−7
	28	23,985,323	24,991,309	3	24,485,323a	24,334,640	0.080	0.11 (0.06)	0.068	−0.47 (0.10)	4.54 × 10−7
CD	3	87,713,085	88,819,263	2	88,213,085a	87,638,290	0.018	−0.29 (0.12)	0.015	0.82 (0.19)	8.77 × 10−7
	6	76,026,228	77,061,527	89	76,542,923a	74,889,187	0.287	−0.10 (0.03)	0.228	0.22 (0.06)	7.15 × 10−7
	11	48,278,616	49,764,300	31	48,778,616a	48,908,041	0.165	0.11 (0.04)	0.196	−0.26 (0.06)	2.11 × 10−7
	23	3,078,545	4,088,215	44	3,581,168b	3,660,670	0.044	−0.13 (0.07)	0.008	1.28 (0.28)	9.81 × 10−7
	27	16,617,773	17,634,805	3	17,128,718a	18,055,239	0.499	0.09 (0.03)	0.433	−0.17 (0.05)	1.21 × 10−6

1WH, wither height; BL, back length; HW, hip width; CW, chest width; CD, chest depth.

^aIntergenic variant.

^bIntron variant.

^cMissense variant.

^d3′ UTR variant.